Jared Simpson

@jaredtsimpson

Computational Biologist. Principal Investigator at OICR & Assistant Professor .

simpsonlab.github.io
Se unió en septiembre de 2009
7 fotos y videos Fotos y vídeos

Tweets

Bloqueaste a @jaredtsimpson

¿Estás seguro de que quieres ver estos Tweets? Ver los Tweets no desbloqueará a @jaredtsimpson

  1. retwitteó
    4 dic.

    Our preprint introducing >300 Gbp sequencing of microbial community standards is up! Of interest to anyone looking for juicy real data to put tools to the test. Amazing lab work & nice first paper with lab

    4 respuestas 86 retweets 174 Me gusta
    Deshacer
  2. retwitteó
    28 nov.

    Now available from : and with colleagues including and measured over 1,000,000,000 Cas9 editing outcomes, and thoroughly dissected the data. 1/

    5 respuestas 49 retweets 94 Me gusta
    Mostrar este hilo
    Mostrar este hilo
    Deshacer
  3. retwitteó
    28 nov.

    lab with a beautiful paper:

    3 retweets 1 Me gusta
    Deshacer
  4. retwitteó
    26 nov.

    High-Throughput Biology: From Sequence to Networks, 6-day course w/. Applications due 1/15. Instructors:

    18 retweets 28 Me gusta
    Deshacer
  5. retwitteó
    12 nov.

    Announcing a first release of methplotlib: a genome browser for methylation data from nanopolish by . Feedback and contributions more than welcome!

    3 respuestas 98 retweets 165 Me gusta
    Mostrar este hilo
    Mostrar este hilo
    Deshacer
  6. retwitteó
    23 oct.

    Interested in a long-read assembler with the speed of miniasm and comparable consensus accuracy of canu? Try wtdbg2 by my friend Jue Ruan. A human genome in one day. Also available from bioconda.

    9 respuestas 211 retweets 342 Me gusta
    Deshacer
  7. retwitteó
    21 oct.

    TT position available at U of Toronto in genomics and statistical genetics. Great community and colleagues here in Toronto. Potential opportunities for a link with . Please RT

    1 respuesta 56 retweets 28 Me gusta
    Mostrar este hilo
    Mostrar este hilo
    Deshacer
  8. retwitteó
    18 oct.

    I think this'll be our best promethion run so far! It just blew past 75Gb in 24hours with >2100 pores still sequencing and >96% pore occupancy

    1 respuesta 18 retweets 38 Me gusta
    Deshacer
  9. retwitteó
    18 oct.

    Sooo good! Using long-read sequencing to detect imprinted DNA methylation

    9 retweets 14 Me gusta
    Deshacer
  10. retwitteó
    16 oct.

    D-NAscent: dynamics by sequencing reveals on single-molecules replication origins, fork direction & fork pausing. Great collaboration

    3 respuestas 34 retweets 53 Me gusta
    Deshacer
  11. 16 oct.

    We just posted a preprint on measuring genome replication by detecting nucleotide analogues incorporated into the yeast genome using signals. Work led by , and .

    1 respuesta 34 retweets 54 Me gusta
    Deshacer
  12. retwitteó
    15 oct.

    Never imagined that the malloc in glibc affects the multithreaded performance by this much! :o Impact of malloc on call-methylation performance ...

    3 respuestas 12 retweets 29 Me gusta
    Deshacer
  13. 11 sept.

    New nanopolish release (0.10.2) containing the first public version of our poly-A tail length estimator for direct RNA reads: . Developed by Paul Tang in my group.

    3 respuestas 90 retweets 158 Me gusta
    Deshacer
  14. retwitteó
    3 ago.

    130.6 Gb from our first PromethION flowcell... The most exciting moment was realising we still had 7000 pores after 64 hours so fuelled it up and kicked it off again!

    15 respuestas 54 retweets 159 Me gusta
    Deshacer
  15. 25 jul.

    nanopolish v0.10.1 released: this version changes the interface of the consensus polishing workflow so some pipelines may need to be updated. See the release notes here:

    1 respuesta 69 retweets 106 Me gusta
    Deshacer
  16. retwitteó
    24 jul.

    Slides from my talk on "k-mer Data Structures" at :

    2 respuestas 38 retweets 90 Me gusta
    Deshacer
  17. retwitteó
    20 jul.

    Received a nice NanoPlot feature suggestion from : evolution of sequencing speed across time. Here is an example of one of our PromethION runs. Available in v1.15.0 from PyPI

    12 retweets 36 Me gusta
    Deshacer
  18. retwitteó
    20 jul.

    Come work with us and help build the foundation for a Canadian approach to national genomics research!

    Backend Developer - CanDIG -
    1 respuesta 3 retweets 7 Me gusta
    Mostrar este hilo
    Mostrar este hilo
    Deshacer
  19. retwitteó
    8 jul.

    Week end fun : Ecoli consensus and chr22 methylation detection using on my mobile phone for some reads (Includes minimap2 and samtools).

    2 respuestas 14 retweets 29 Me gusta
    Deshacer
  20. retwitteó
    5 jul.

    Meet us at : talks on diploid assembly () and on using Strand-seq to sort long reads by chromosome prior to assembly (). Two posters: sequence-to-graph alignment and haplotype phasing. Also, we are LOOKING FOR POSTDOCS.

    1 respuesta 16 retweets 28 Me gusta
    Deshacer

@jaredtsimpson no ha twitteado todavía.

Parece que el contenido está tardando un poco en cargarse.

Puede que Twitter esté saturado o experimentando un problema momentáneo. Inténtalo de nuevo o visita el Estado de Twitter para más información.

    También te puede gustar

    ·