Agronomy — Open Access Journal

Heterogeneity in pineapple fruit quality explains the low export volume of fruits from Benin to international markets. This work aims to investigate the influences of residues mulching or burying and N-K fertilization on (1) fresh fruit juice quality and the proportion of fruit meeting European standards and (2) fruit acceptability for fresh local consumption, as well as to identify morphological characteristics most related to fruit chemical quality attributes. The experimental design was a split-plot with three replications, where the main factor was N-K fertilization (T1 = 1.6 N and 1.6 K, T2 = 5.8 N and 6.6 K, T3 = 10 N and 11.6 K, T4 = 1.6 N and 11.6 K, T5 = 10 N and 1.6 K in g·plant⁻¹) and the sub-plot factor was mulching with pineapple residues (no mulching = 0, surface mulching = 10, buried = 10 in t·ha⁻¹). The results suggested that residues mulching and N-K fertilization has improved the percentage of fruit meeting European standards and local acceptability. The treatments T2B (T2 + burying) and T4B (T4 + burying) gave a higher proportion of fruits meeting European standards and were also promising for producing highly acceptable fruits by local consumers. Finally, the results revealed that the ratios of crown length: fruit length, crown length: infructescence length and crown length: median diameter were significantly associated with fruit quality, which has not yet been reported. Full article

In nature, plants integrate a wide range of light signals from solar radiation to adapt to the surrounding light environment, and these light signals also regulate a variety of important agronomic traits. Blue light-sensing cryptochrome (cry) and red/far-red light-sensing phytochrome (phy) play critical roles in regulating light-mediated physiological responses via the regulated transcriptional network. Accumulating evidence in the model plant Arabidopsis has revealed that crys and phys share two mechanistically distinct pathways to coordinately regulate transcriptional changes in response to light. First, crys and phys promote the accumulation of transcription factors that regulate photomorphogenesis, such as HY5 and HFR1, via the inactivation of the CONSTITUTIVE PHOTOMORPHOGENIC1/SUPPRESSOR OF PHYA-105 E3 ligase complex by light-dependent binding. Second, photoactive crys and phys directly interact with PHYTOCHROME INTERACTING FACTOR transcription factor family proteins to regulate transcriptional activity. The coordinated regulation of these two pathways (and others) by crys and phys allow plants to respond with plasticity to fluctuating light environments in nature. Full article

Maize production in Uganda is constrained by various factors, but especially drought and stem borers contribute to significant yield losses. Genetically modified (GM) maize with increased drought tolerance and/or Bt insect resistance (producing the Bacillus thuringiensis Cry protein) is considered as an option. For an ex ante impact analysis of these technologies, a farmer survey was carried out in nine districts of Uganda, representing the major farming systems. The results showed that farmers did rate stem borer and drought as the main constraints for maize farming. Most farmers indicated a positive attitude towards GM maize, and 86% of all farmers said they would grow GM maize. Farmer estimated yield losses to drought and stem borer damage were on average 54.7% and 23.5%, respectively, if stress occurred. Taking the stress frequency into consideration (67% for both), estimated yield losses were 36.5% and 15.6% for drought and stem borer, respectively. According to the ex-ante partial budget analysis, Bt hybrid maize could be profitable, with an average value/cost ratio of 2.1. Drought tolerant hybrid maize had lower returns and a value/cost ratio of 1.5. Negative returns occurred mainly for farmers with non-stressed grain yields below 2 t·ha⁻¹. The regulatory framework in Uganda needs to be finalized with consideration of strengthening key institutions in the maize sector for sustainable introduction of GM maize. Full article

The population of Africa will double in the next 33 years to reach 2.5 billion by 2050. Although roughly 60% of the continent’s population is engaged in agriculture, the produce from this sector cannot feed its citizens. Hence, in 2013 alone, Africa imported 56.5 million tons of wheat, maize, and soybean at the cost of 18.8 billion USD. Although crops cultivated in Africa play a vital role in their contribution to Food Security, they produce inferior yields compared to those in other parts of the world. For instance, the average cereal yield in Africa is only 1.6 t·ha⁻¹ compared to the global 3.9 t·ha⁻¹. Low productivity in Africa is also related to poor soil fertility and scarce moisture, as well as a variety of insect pests, diseases, and weeds. While moisture scarcity is responsible for up to 60% of yield losses in some African staple cereals, insect pests inflict annually substantial crop losses. In order to devise a strategy towards boosting crop productivity on the continent where food insecurity is most prevalent, these production constraints should be investigated and properly addressed. This review focuses on conventional (also known as genetic) intensification in which crop productivity is raised through breeding for cultivars with high yield-potential and those that thrive well under diverse and extreme environmental conditions. Improved crop varieties alone do not boost crop productivity unless supplemented with optimum soil, water, and plant management practices as well as the promotion of policies pertaining to inputs, credit, extension, and marketing. Studies in Kenya and Uganda have shown that the yield of cassava can be increased by 140% in farmers’ fields using improved varieties and management practices. In addition to traditional organic and inorganic fertilizers, biochar and African Dark Earths have been found to improve soil properties and to enhance productivity, although their availability and affordability to African farmers remains to be explored. The concept of Integrated Soil Fertility Management (ISFM) has been successfully implemented in some African countries in the Great Lake Region. Other innovative technologies favorably accepted by farmers are the “Push-pull System” (an elegant method of controlling a devastating insect pest and a parasitic weed) and NERICA (New Rice for Africa, in which rice varieties with desirable nutritional and agronomic properties were developed by crossing Asian and African rice). This review calls for African governments and institutions not only to provide conducive environments but also to abide by the Maputo 2003 Declaration where they agreed to invest 10% of their national budget to agricultural research and development as the outcome has a positive impact on productivity and ultimately improves the livelihood of farmers. Full article

The perception and absorption of light by plants is a driving force in plant evolutionary history, as plants have evolved multiple photoreceptors to perceive different light attributes including duration, intensity, direction and quality. Plant photoreceptors interpret these signals from the light environment and mold plant architecture to maximize foliar light capture. As active sites of the production and accumulation of energy‐rich products, leaves are targets of pests and pathogens, which have driven the selection of physiological processes to protect these energy‐rich tissues. In the last ten years, several research groups have accumulated evidence showing that plant photoreceptors control specific molecular programs that define plant growth and immune processes. Here, we discuss recent knowledge addressing these roles in Arabidopsis and show that (1) plant immune responses affect energy acquisition and partitioning; (2) plant photoreceptors interpret the light environment and control growth and immune processes; and finally; (3) defense and light signaling pathways can be genetically manipulated to obtain plants able to grow and defend at the same time. This basic knowledge from Arabidopsis plants should lead new lines of applied research in crops. Full article

In northern Europe, replacing winter barley with winter wheat as the preceding crop for winter oilseed rape (Brassica napus L.; WOSR) often results in a delayed WOSR sowing and poor autumn growth. Based on data from a field experiment running in 2009/2010, 2010/2011, and 2012/2013, this study aims (i) to investigate how a delayed sowing method affects seed yield, N offtake with the seeds, and apparent N use efficiency (NUE) of WOSR; (ii) to test the ability of autumn and spring N fertilization to compensate for the negative effects of a delayed sowing method; and (iii) to estimate the minimum autumnal growth for optimal seed yield. In order to create sufficiently differentiated canopies, a combination of four sowing methods (first week of August until the third week of September) and four autumn N treatments (0, 30, 60, and 90 kg·N·ha⁻¹) was established. Each of these 16 different canopies was fertilized with 5 N amounts (0/0, 40/40, 80/80, 120/120, 140/140 kg·N·ha⁻¹) in spring in order to estimate separate N response curves. Above-ground N accumulation in autumn and seed yield and N offtake by the seeds were determined. Plant establishment after mid-September significantly decreased seed yield. Autumn N fertilization of at least 30 kg·N·ha⁻¹ increased seed yield and N offtake by the seeds without any significant interaction with sowing method and spring N supply. However, the pathway(s) remain(s) unclear. Spring N fertilization up to 130 kg·N·ha⁻¹ (estimated by a Linear-Plateau N response curve) increased seed yield. NUE decreased with increasing N supply, where WOSR used autumn N to a lesser extent than spring N. An above-ground N uptake of at least 10–15 kg·N·ha⁻¹ at the end of autumn growth was required to achieve high seed yields. From an environmental point of view, optimal autumn growth should be attained by choosing an adequate sowing method, not by applying additional N in autumn. Full article

Because of continuing increases in atmospheric CO₂, identifying cultivars of crops with larger yield increases at elevated CO₂ may provide an avenue to increase crop yield potential in future climates. Free-air CO₂ enrichment (FACE) systems have most often been used with multiple replications of each CO₂ treatment in order to increase confidence in the effect of elevated CO₂. For screening of cultivars for yield increases at elevated CO₂, less precision about the CO₂ effect, but more precision about cultivar ranking within CO₂ treatments is appropriate. As a small-scale test of this approach, three plots, each of four cultivars of wheat, were grown in single FACE and control plots over two years, and the cultivar rankings of yield at elevated and ambient CO₂ were compared. Each replicate plot was the size used in traditional cultivar comparisons. An additional test using four smaller replicate plots per cultivar within one FACE and one ambient plot was used to compare nine cultivars in another year. In all cases, elevated CO₂ altered the ranking of cultivars for yield. This approach may provide a more efficient way to utilize FACE systems for the screening of CO₂ responsiveness. Full article

Seasonal growth patterns of perennial plants are linked to patterns of acclimation and de-acclimation to seasonal stresses. The timing of cold acclimation (development of freezing resistance) and leaf growth cessation in autumn, and the timing of de-acclimation and leaf regrowth in spring, is regulated by seasonal cues in the environment, mainly temperature and light factors. Warming will lead to new combinations of these cues in autumn and spring. Extended thermal growing seasons offer a possibility for obtaining increased yields of perennial grasses at high latitudes. Increased productivity in the autumn may not be possible in all high latitude regions due to the need for light during cold acclimation and the need for accumulating a carbohydrate storage prior to winter. There is more potential for increased yields in spring due to the availability of light, but higher probability of freezing events in earlier springs would necessitate a delay of de-acclimation, or an ability to rapidly re-acclimate. In order to optimize the balance between productivity and overwintering in the future, the regulation of growth and acclimation processes may have to be modified. Here, the current knowledge on the coordinated regulation of growth and freezing resistance in perennial grasses is reviewed. Full article

This review deals with the adaptive mechanisms that plants can implement to cope with the challenge of salt stress. Plants tolerant to NaCl implement a series of adaptations to acclimate to salinity, including morphological, physiological and biochemical changes. These changes include increases in the root/canopy ratio and in the chlorophyll content in addition to changes in the leaf anatomy that ultimately lead to preventing leaf ion toxicity, thus maintaining the water status in order to limit water loss and protect the photosynthesis process. Furthermore, we deal with the effect of salt stress on photosynthesis and chlorophyll fluorescence and some of the mechanisms thought to protect the photosynthetic machinery, including the xanthophyll cycle, photorespiration pathway, and water-water cycle. Finally, we also provide an updated discussion on salt-induced oxidative stress at the subcellular level and its effect on the antioxidant machinery in both salt-tolerant and salt-sensitive plants. The aim is to extend our understanding of how salinity may affect the physiological characteristics of plants. Full article

Flowering time is a key target trait for extending the vegetative phase to increase biomass in bioenergy crops such as perennial C₄ grasses. Molecular genetic studies allow the identification of genes involved in the control of flowering in different species. Some regulatory factors of the Arabidopsis pathway are conserved in other plant species such as grasses. However, differences in the function of particular genes confer specific responses to flowering. One of the major pathways is photoperiod regulation, based on the interaction of the circadian clock and environmental light signals. Depending on their requirements for day-length plants can be classified as long-day (LD), short-day (SD), and day-neutral. The CONSTANS (CO) and Heading Date 1 (Hd1), orthologos genes, are central regulators in the flowering of Arabidopsis and rice, LD and SD plants, respectively. Additionally, Early heading date 1 (Ehd1) induces the expression of Heading date 3a (Hd3a), conferring SD promotion and controls Rice Flowering Locus T 1 (RFT1) in LD conditions, independently of Hd1. Nevertheless, the mechanisms promoting flowering in perennial bioenergy crops are poorly understood. Recent progress on the regulatory network of important gramineous crops and components involved in flowering control will be discussed. Full article

Forage legumes have a relatively high biomass yield and crude protein content, but their grazed and harvested biomass lacks the high-energy carbohydrates required to meet the productivity potential of modern livestock breeds. Because of their low carbohydrate content, forage legume diets are typically supplemented with starch rich cereal grains or maize (Zea mays), leading to the disruption of local nutrient cycles. Although plant leaves were first reported to accumulate starch in a diurnal pattern over a century ago, leaf starch content has yet to be exploited as an agronomic trait in forage crops. Forage legumes such as red clover (Trifolium pratense) have the genetic potential to accumulate up to one third of their leaf dry mass as starch, but this starch is typically degraded at night to support nighttime growth and respiration. Even when diurnal accumulation is considered with regard to the time the crop is harvested, only limited gains are realized due to environmental effects and post-harvest losses from respiration. Here we present original data for starch metabolism in red clover and place it in the broader context of other forage legumes such as, white clover (T. repens), and alfalfa (Medicago sativa). We review the application of recent advances in molecular breeding, plant biology, and crop phenotyping, to forage legumes to improve and exploit a potentially valuable trait for sustainable ruminant livestock production. Full article

Leaf senescence is a long developmental phase important for plant performance and nutrient management. Cell constituents are recycled in old leaves to provide nutrients that are redistributed to the sink organs. Up to now, metabolomic changes during leaf senescence have been mainly studied in Arabidopsis (Arabidopsis thaliana L.). The metabolite profiling conducted in barley (Hordeum vulgare L.) during primary leaf senescence under two nitrate regimes and in flag leaf shows that amino acids, hexose, sucrose and glycolysis intermediates decrease during senescence, while minor carbohydrates accumulate. Tricarboxylic acid (TCA) compounds changed with senescence only in primary leaves. The senescence-related metabolite changes in the flag leaf were globally similar to those observed in primary leaves. The effect of senescence on the metabolite changes of barley leaves was similar to that previously described in Arabidopsis except for sugars and glycolysis compounds. This suggests a different role of sugars in the control of leaf senescence in Arabidopsis and in barley. Full article

Phalaris aquatica is a cool-season perennial grass species that is extensively cultivated in Australia, with additional usage in other areas of the world. Phalaris displays a number of desirable agronomic characteristics, although unfavourable traits include excessive seed shattering, sensitivity to aluminium toxicity, and several toxicosis syndromes. Varietal development has to date been based on traditional selection methods, but would benefit from the application of genomics-based approaches, which require the development of large-scale sequence resources. Due to a large nuclear DNA content, methods that target the expressed component of the genome and reduce the complexity of analysis are most amenable to current sequencing technologies. A reference unigene set has been developed by transcriptome sequencing of multiple tissues from a single plant belonging to the variety Landmaster. Comparisons have been made to gene complements from related species, as well as reference protein databases, and patterns of gene expression in different tissues have been evaluated. A number of candidate genes relevant to removal of undesirable attributes have been identified. The reference unigene set will provide the basis for detailed studies of differential gene expression and identification of candidate genes for potential transgenic deployment, as well as a critical resource for genotypic analysis to support future genomics-assisted breeding activities for phalaris improvement. Full article

The combination of biochar (BC) with compost has been suggested to be a promising strategy to promote plant growth and performance, but although “synergistic” effects have been stated to occur, full-factorial experiments are few, and explicit tests for synergism are lacking. We tested the hypothesis that a combination of BC and spent mushroom substrate (SMS) has a positive synergistic effect on plant growth and physiological performance in a nutrient-limited growing media. A greenhouse experiment with a full factorial design was conducted using mixed-wood BC (3.0 kg·m⁻²) and SMS (1.5 kg·m⁻²) (the combination was not co-composted) as organic soil amendments for the annual Abutilon theophrasti and the perennial Salix purpurea. Several measurements related to plant growth and physiological performance were taken throughout the experiment. Contrary to the hypothesis, we found that the combination of BC + SMS had neutral or antagonistic interactive effects on many plant growth traits. Antagonistic effects were found on maximum leaf area, above- and belowground biomass, reproductive allocation, maximum plant height, chlorophyll fluorescence, and stomatal conductance of A. theophrasti. The effect on S. purpurea was mostly neutral. We conclude that the generalization that BC and compost have synergistic effects on plant performance is not supported. Full article

Remotely-sensed canopy temperature from infrared thermometer (IRT) sensors has long been shown to be effective for detecting plant water stress. A field study was conducted to investigate peach tree responses to deficit irrigation which was controlled using canopy to air temperature difference (ΔT) during the postharvest period at the USDA-ARS (U.S. Department of Agriculture, Agricultural Research Service) San Joaquin Valley Agricultural Sciences Center in Parlier, California, USA. The experimental site consisted of a 1.6 ha early maturing peach tree orchard. A total of 18 IRT sensors were used to control six irrigation treatments including furrow, micro-spray, and surface drip irrigation systems with and without postharvest deficit irrigation. During the postharvest period in the 2012–2013 and 2013–2014 growing seasons, ΔT threshold values at mid-day was tested to trigger irrigation in three irrigation systems. The results showed that mid-day stem water potentials (ψ) for well irrigated trees were maintained at a range of −0.5 to −1.2 MPa while ψ of deficit irrigated trees dropped to lower values. Soil water content in deficit surface drip irrigation treatment was higher compared to deficit furrow and micro-spray irrigation treatments in 2012. The number of fruits and fruit weight from peach trees under postharvest deficit irrigation treatment were less than those well-watered trees; however, no statistically significant (at the p < 0.05 level) reduction in fruit size or quality was found for trees irrigated by surface drip and micro-spray irrigation systems by deficit irrigation. Beside doubles, we found an increased number of fruits with deep sutures and dimples which may be a long-term (seven-year postharvest regulated deficit irrigation) impact of deficit irrigation on this peach tree variety. Overall, deployment of IRT sensors provided real-time measurement of canopy water status and the information is valuable for making irrigation management decisions. Full article

Brachiaria grass is an emerging forage option for livestock production in Kenya. Kenya lies within the center of diversity for Brachiaria species, thus a high genetic variation in natural populations of Brachiaria is expected. Overgrazing and clearing of natural vegetation for crop production and nonagricultural uses and climate change continue to threaten the natural biodiversity. In this study, we collected 79 Brachiaria ecotypes from different parts of Kenya and examined them for genetic variations and their relatedness with 8 commercial varieties. A total of 120 different alleles were detected by 22 markers in the 79 ecotypes. Markers were highly informative in differentiating ecotypes with average diversity and polymorphic information content of 0.623 and 0.583, respectively. Five subpopulations: International Livestock Research Institute (ILRI), Kitui, Kisii, Alupe, and Kiminini differed in sample size, number of alleles, number of private alleles, diversity index, and percentage polymorphic loci. The contribution of within‐the‐individual difference to total genetic variation of Kenyan ecotype population was 81%, and the fixation index (FST = 0.021) and number of migrant per generation (Nm = 11.58) showed low genetic differentiation among the populations. The genetic distance was highest between Alupe and Kisii populations (0.510) and the lowest between ILRI and Kiminini populations (0.307). The unweighted neighborjoining (NJ) tree showed test ecotypes grouped into three major clusters: ILRI ecotypes were present in all clusters; Kisii and Alupe ecotypes and improved varieties grouped in clusters I and II; and ecotypes from Kitui and Kiminini grouped in cluster I. This study confirms higher genetic diversity in Kenyan ecotypes than eight commercial varieties (Basilisk, Humidicola, Llanero, Marandú, MG4, Mulato II, Piatá and Xaraés) that represent three species and one three‐way cross‐hybrid Mulato II. There is a need for further collection of local ecotypes and their morphological, agronomical, and genetic characterizations to support Brachiaria grass breeding and conservation programs. Full article

A field experiment was conducted at three locations in the southern region of Ethiopia during the 2012 and 2013 cropping seasons to evaluate chickpea cultivars for their response to soil zinc application, including agronomic performance, grain yield, grain zinc concentration, zinc and agronomic efficiency. Fifteen chickpea cultivars were evaluated in a randomized complete block design with three replications at each location and year. The highest number of pods (237) plant⁻¹ was obtained from Butajira local landrace. The cultivar Naatolii produced the highest grain yield (2895 kg·ha⁻¹), while the breeding line FLIP03-53C had the lowest yield (1700 kg·ha⁻¹). The highest zinc concentrations of 47.5, 47.4, and 46.4 mg·kg⁻¹ grain were obtained from the cultivar Arerti, and the two breeding lines FLIP07-27C and FLIP08-60C, respectively. The highest zinc efficiency (88%) was obtained from the Wolayita local landrace, whereas the highest agronomic efficiency of 68.4 kg yield increase kg⁻¹ zinc application was obtained from the cultivar Naatolii. The current research identified chickpea cultivars with high grain zinc concentration, zinc efficiency, agronomic efficiency, and grain yield. The identification of cultivars with high grain zinc concentration allows the use of chickpea as a potential alternative to help to correct zinc deficiency, which is highly prevalent in the population of the region. Full article

Round-bale silage harvesting and processing methods were assessed to evaluate overwintering ability and dry matter (DM) yield, fermentation quality and palatability of overwintered dwarf Napiergrass (Pennisetum purpureum Schumach) in the two years following establishment in Nagasaki, Japan, in May 2013 using rooted tillers with a density of 2 plants/m². In 2014, harvesting methods under no-wilting treatment were compared for flail-type harvesting with a round-baler (Flail/baler plot) and mower conditioning with a round-baler (Mower/baler plot), which is common for beef-calf–producing farmers in the region. In 2015, the effect of ensilage with wilting was investigated only in the Mower/baler plot. Dwarf Napiergrass was cut twice, in early August (summer) and late November (late autumn), each year. The winter survival rate was greater than 96% in May both years. The DM yield in the Mower/baler plot did not differ significantly for the first summer cutting or the annual total from the Flail/baler plot, but did show inferior yield for the second cutting. The fermentation quality of the second-cut plants, estimated using the V2-score, was higher in the Flail/baler plot than in the Mower/baler plot, possibly because of higher air-tightness, and the second-cut silage tended to have better fermentation quality than the first-cut silage in both harvesting plots. Wilting improved the fermentation quality of dwarf Napiergrass silage in summer, but not in autumn. The palatability of the silage, as estimated by alternative and voluntary intake trials using Japanese Black beef cattle, did not differ significantly between plots. The results suggest that dwarf Napiergrass can be better harvested using a mower conditioner with processing by a round-baler, an approach common to beef-calf–producing farmers, than with the flail/baler system, without reducing the persistence, yield, or palatability of the silage. Moreover, wilting treatment improved the fermentation quality of the dwarf Napiergrass silage when processed in summer. Full article

A novel new way to achieve chemical-free defoliation of cotton is discussed. The research found that by severing the phloem tissue on the main stalk, via a girdling operation, the operation stimulated the cotton plant to alter its growth into an early senescence pathway that resulted in the plant shedding its leaves and opening up all its bolls, leaving the plant in the perfect state for machine harvesting. Even with follow-up rains, zero regrowth occurred in the treated plants, unlike the untreated control plots where significant regrowth did occur. This report compares the results of greenhouse and field trials where the girdling operation was performed by hand, flame, mechanical and via a CO₂ laser to achieve phloem tissue severance. Design parameters for a prototype laser girdling system are also provided. Results suggest that for deficit irrigated cotton, girdling can provide an alternative means to defoliate cotton. Full article