Bioconductor

@Bioconductor

Roswell Park Cancer Institute
bioconductor.org
Joined November 2011
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  1. Dec 11

    Bioconductor pkgs are just R pkgs; they don't have any special properties. The issue comes from GOSemSim::load_OrgDb, which says `require(...)`, attaching the org.db & other pkgs to the search path; this is definitely poor form, but does not cause an R CMD check warning.

    Replying to @David_McGaughey @Bioconductor
    Another issue is that even if I load `clusterProfiler::bitr` this function still loads AnnotationDbi into the namespace….is that allowed behavior for libraries?
    1 reply 1 retweet 2 likes
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  2. Dec 11

    Use them fully resolved `AnnotationDbi::select()` / `dplyr::select()` or use the conflicted package to die earlier.

    Isn’t there someway to handle and each REALLY wanting `select` ? This issue keeps murdering my scripts/r notebooks.
    2 replies 2 retweets 7 likes
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  3. Retweeted
    Dec 7

    We're hiring! Want to help develop the platform? Check out our Research Scientist position with .

    9 retweets 6 likes
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  4. Retweeted
    Dec 6

    Registration for in NYC is now open, and several invited speakers announced (, , , , Lihua Julie Zhu). Travel scholarships available. FYI to all at ...

    1 reply 33 retweets 31 likes
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  5. Nov 30

    really good & compassionate advice

    Since we're running a bit short of time at we'll skip my talk, but here are my slides on 'Getting help and helping others (including future you)' when using &
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    8 retweets 13 likes
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  6. Retweeted
    Nov 26

    Registration now open for the EMBL Course: Introduction to Bioinformatics with R and Bioconductor, a beginner level course that provides a basic training in generic statistical bioinformatics data analysis, 1 - 4 Apr

    3 retweets 8 likes
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  7. Retweeted
    Nov 19

    My group is hiring a software engineer talented in and familiar with . We're committed to and science.

    1 reply 58 retweets 62 likes
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  8. Retweeted
    Nov 8

    Some recent development branch updates to the package allow both piping (%>%) and formula-free (no ~) filtering exposing the metadata like to -like filtering (and select).

    3 replies 16 retweets 29 likes
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  9. Retweeted
    Nov 8

    The software list is up at A tweet with hashtag and the CRAN, GitHub, BitBucket, or Bioconductor URL will get your software added. Thanks to for helping set this up last year for the meeting.

    13 replies 72 retweets 132 likes
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  10. Nov 6

    / Software ecosystem architect position, Dana Farber Cancer Institute

    7 retweets 2 likes
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  11. Oct 31

    Trick or Treat?! Bioc 3.8 is now available!

    28 retweets 48 likes
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  12. Retweeted
    Oct 22

    I'm looking for a Research software engineer/bioinformatician to work on and omics.

    33 retweets 22 likes
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  13. Retweeted
    Oct 17

    Our approach to producing Workshop compendium for , coordinating 17 authors, 15 contributions to produce 388 page book and matching computational resources in 10 weeks.

    2 replies 19 retweets 44 likes
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  14. Retweeted
    Oct 15

    Just finished to prepare 2 courses: 1) core packages for data analysis 2) and data analysis See Will teach them in the next 2 days M2 bioinfo

    6 retweets 24 likes
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  15. Retweeted
    Oct 15

    Our team will work to make the data and compute resources in the AnVIL available to as wide a community of researchers as possible. Drawing on our experience implementing and we will build a variety of entry points to the AnVIL for different users...

    1 reply 3 retweets 6 likes
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  16. Retweeted
    Oct 15

    Awesome use of 's Tabula Muris data - a package to load the data! Thanks !!

    1 reply 10 retweets 22 likes
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  17. Retweeted
    Oct 12

    We're hiring! Want to help develop the platform? Check out our Research Scientist position with .

    1 reply 22 retweets 17 likes
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  18. Retweeted
    Sep 4

    Registration is now open for European Developer meeting Dec 6-7 at TUM in Munich. Featuring , , Bernd Bischl and more .. Abstract deadline: Oct 10 Details:

    21 retweets 20 likes
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  19. Retweeted
    Aug 20

    Our group is hiring a Bioinformatics Analyst. Live in , work on , , and cutting edge CAR T cell and research.

    1 reply 23 retweets 21 likes
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  20. Retweeted
    Jul 29

    Please RT: We are hiring a (min. 2 year) postdoc. Live in Zurich! Analyze single-cell data of various flavours .. develop (and benchmark) statistical / computational tools! Details to follow soon.

    5 replies 215 retweets 112 likes
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