User: sinha.puja
sinha.puja • 0
- Reputation:
- 0
- Status:
- New User
- Location:
- Last seen:
- 15 hours ago
- Joined:
- 1 week, 6 days ago
- Email:
- s*********@ufl.edu
Posts by sinha.puja
<prev
• 11 results •
page 1 of 2 •
next >
0
votes
0
answers
40
views
0
answers
... Hi Yuan, I tried using as.character function but again it gives me the same type of error as mentioned in the upper section.
...
written 17 hours ago by
sinha.puja • 0
0
votes
1
answers
457
views
1
answers
... Hi,
I am also facing the same problem as you mentioned above. Your colleague wrote something about solution but I didn't get your arguments. Can you be able to explain me your function to resolve this..?
Thanks!
...
written 1 day ago by
sinha.puja • 0
0
votes
0
answers
40
views
0
answers
... My code is:
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install("ChAMP")
library(ChAMP)
baseDir2 <- "/C:/Users/sinha.puja/Desktop/idats"
myLoad <- champ.load(directory = getwd(),arraytype="EPIC")
champ.QC()
myNorm <- champ.norm(beta=my ...
written 1 day ago by
sinha.puja • 0
0
votes
0
answers
40
views
0
answers
... Hi,
I am trying to analyze Illumina EPIC methylation array data with Champ.
and getting the following error when run champ.svd() :
<< PhenoTypes.lv generated successfully. >>
Error in summary(lm(svd.o$v[, c] ~ PhenoTypes.lv[[f]]))$coeff[2, 4] :
subscript out of bounds
Any ideas o ...
written 1 day ago by
sinha.puja • 0
0
votes
0
answers
67
views
0
answers
... I tried to use tab key in R and it shows no matches. Also while installing ChAMP I got the following warning messages:
ERROR: failed to lock directory 'C:/Users/sinha.puja/Documents/R/win-library/3.5' for modifying
Try removing 'C:/Users/sinha.puja/Documents/R/win-library/3.5/00LOCK-IlluminaHumanMe ...
written 4 days ago by
sinha.puja • 0
0
votes
0
answers
67
views
0
answers
... Hi..I tried to use ChAMP for my EPIC methylation array data and I use the following commands but it's not working,
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ChAMP", version = "3.8")
a
BiocManager::install("ChAMPdata", version = "3. ...
written 4 days ago by
sinha.puja • 0
0
votes
1
answer
56
views
1
answer
... Hi..I tried to load minfi package in Rstudio, but the loading says error:
Error: package or namespace load failed for ‘minfi’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
there is no package called ‘readr’
And when I tried to run the command, it gives me fo ...
written 5 days ago by
sinha.puja • 0
0
votes
1
answers
67
views
1
answers
... I found the error and corrected it, now its working. Thanks a lot.
...
written 12 days ago by
sinha.puja • 0
0
votes
1
answers
67
views
1
answers
... After removing the extra slash also I am getting the same type of error i.e,
Error in read.metharray.sheet(baseDir) : 'base' does not exists.
I am stuck at the very first step, don't know how to get rid off. If anyone else is having the same issue or know how to resolve then please respond.
Thank ...
written 13 days ago by
sinha.puja • 0
0
votes
1
answers
67
views
1
answers
... I also tried using targets <- read.metharray.sheet(baseDir) but still I got the error
Error in read.metharray.sheet(baseDir) : 'base' does not exists
I don't know how to resolve this issue. Please help.
...
written 13 days ago by
sinha.puja • 0
Latest awards to sinha.puja
No awards yet. Soon to come :-)
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.2.0
Traffic: 294 users visited in the last hour