User: ruan_wei_dong
ruan_wei_dong • 0
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Posts by ruan_wei_dong
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... I solved this problem, thank Michael Lawrence for his helpful help, and hope that my experience can help others.
Error 1
Creating a generic function from function 'uri' in package 'rtracklayer'
Note: possible error in 'updateIds(doc, save = x)': unused argument (save = x)
........
Solution1：
T ...
written 15 days ago by
ruan_wei_dong • 0
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... Thank you! I tried setting PKG_CONFIG_PATH to my /usr/local/lib64/pkgconfig, it is work well.
I have learned a lot, thank you Michael Lawrence!!
[RWD@localhost tmp]$ ls /usr/local/lib64/pkgconfig
libcrypto.pc libssl.pc openssl.pc
[RWD@localhost tmp]$ less /usr/local/lib64/pkgconfig/openssl.pc
...
written 15 days ago by
ruan_wei_dong • 0
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... Operate on my own computer. Maybe I should find a classmate who is familiar with the CentOS system to help. This may be difficult, chemistry students rarely use the Linux system. But I will try it, thank you very much. If you have any guidance and advice, look forward to your help.
...
written 16 days ago by
ruan_wei_dong • 0
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... Too many log file words, bioconductor does not support too many words. If you are willing to read the log file, I can email it to you.That is too difficult for me.
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written 16 days ago by
ruan_wei_dong • 0
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... Sorry, I am a chemist. I just started learning R language. Can you give me some specific implementation commands? This is a bit difficult for me. I don't know how to set PKG_CONFIG_PATH and Sys.setenv(). I am so sorry.Thanks a lot!
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written 16 days ago by
ruan_wei_dong • 0
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... Now I think the problem must be in the libcrypto.so.1.1 .
I tried to delete libcrypto.so.1.1 and changed it to openssl-1.0.0, openssl-1.1.1, openssl-1.1.2 and got a similar error report. You can check out my own reply.
What should I do next?
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written 16 days ago by
ruan_wei_dong • 0
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... Now I know the problem must be in the libcrypto.so.1.1 . Possible modification of the library file is the answer!!!
https://github.com/openssl/openssl/blob/32f803d88ec3df7f95dfbf840c271f7438ce3357/doc/man3/SSL_library_init.pod
The SSL_library_init() and OpenSSL_add_ssl_algorithms() functions were ...
written 16 days ago by
ruan_wei_dong • 0
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... I found a useful information on the website.
https://github.com/openssl/openssl/blob/32f803d88ec3df7f95dfbf840c271f7438ce3357/doc/man3/SSL_library_init.pod
The SSL_library_init() and OpenSSL_add_ssl_algorithms() functions were deprecated in OpenSSL 1.1.0 by OPENSSL_init_ssl().
Is this the reason? ...
written 16 days ago by
ruan_wei_dong • 0
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... Dear Bioconductor Support,
I Updated My R to 3.5.1 and reinstalled the rtracklayer. However, I got the error report as follows：
1 error part
Creating a generic function from function 'uri' in package 'rtracklayer'
Note: possible error in 'updateIds(doc, save = x)': unused argument (save = x)
N ...
written 16 days ago by
ruan_wei_dong • 0
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