User: emb13

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emb130
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Posts by emb13

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Comment: C: EdgeR RNAseq -- best way to deal with random effects
... Thank you again for the feedback, Aaron! ...
written 23 days ago by emb130
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Comment: C: EdgeR RNAseq -- best way to deal with random effects
... Hi Aaron, Thank you so much for your reply. It is correct that dose is completely nested in mesocosm (see my comment to Gordon above). Because of this I have decided to try the third option as this best represents the interaction between group and mesocosm which is apparent in my MDS plot. Is setti ...
written 23 days ago by emb130
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Comment: C: EdgeR RNAseq -- best way to deal with random effects
... Hi Gordon, Thank you for your reply. All mesocosms are at the same physical site, but the site is broken down into fenced in "pads" which contain the mesocosms (which are individual cattle tanks). Thus, the S1 mesocosms (S1h, S1m, S1l, S1c) are within one fenced pad. The pads are very close to one ...
written 23 days ago by emb130
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EdgeR RNAseq -- best way to deal with random effects
... Hello, I am working on an RNAseq project in EdgeR and I have a random effect variable that I am not sure how to best deal with since EdgeR doesn't use mixed models. I have three main questions: 1) how have people dealt with random effects in EdgeR, or do you use different programs to accomplish thi ...
rnaseq edger written 29 days ago by emb130 • updated 29 days ago by Aaron Lun21k

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