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0
votes
0
answers
53
views
0
answers
Unable to reproduce DiffBind PCA plot
diffbind news written 12 days ago by jingyaq • 10
2
votes
1
answer
62
views
1
answer
News: sorted the results of function dba.report in DiffBind R package
diffbind news written 11 days ago by bioqianyang • 0 • updated 11 days ago by Rory Stark • 2.6k
0
votes
2
answers
298
views
2
answers
DiffBind: Error in heights * sapply(called, function(x) x)
diffbind dba.count summits written 12 months ago by zhaolin20042008 • 0 • updated 20 days ago by Ashu • 10
0
votes
0
answers
52
views
0
answers
Converting DESeq2 results to DiffBind object
diffbind deseq2 written 4 weeks ago by rbronste • 60
0
votes
1
answer
63
views
1
answer
dba.count Can't count: some peaksets are not associated with a .bam file.
diffbind written 5 weeks ago by loretta • 0 • updated 5 weeks ago by Rory Stark • 2.6k
3
votes
1
answer
68
views
1
answer
dba.count binding matrix coordinates
diffbind written 6 weeks ago by jingyaq • 10 • updated 5 weeks ago by Rory Stark • 2.6k
0
votes
1
answer
96
views
1
answer
Use DiffBind to find differential peaks among multiple cell types
diffbind deseq2 atac-seq differential analysis written 7 weeks ago by duvaller • 0 • updated 7 weeks ago by Rory Stark • 2.6k
0
votes
1
answer
103
views
1
answer
How to color different column bars independently using dba.plotHeatmap (DiffBind)?
diffbind dba.plotheatmap written 7 weeks ago by Gary • 0 • updated 7 weeks ago by Rory Stark • 2.6k
0
votes
1
answer
74
views
1
answer
adding a new consensus peakset question
diffbind written 7 weeks ago by yuhongning2013 • 0 • updated 7 weeks ago by Rory Stark • 2.6k
3
votes
1
answer
92
views
1
answer
diffbind finding not differential site
chipseq diffbind differential binding analysis histone chip-seq written 8 weeks ago by woongjaej • 0 • updated 7 weeks ago by Rory Stark • 2.6k
3
votes
1
answer
160
views
1
answer
Differential analysis of multiple samples with different time points
diffbind R atac-seq written 9 weeks ago by firas • 0 • updated 9 weeks ago by Rory Stark • 2.6k
0
votes
0
answers
72
views
0
answers
How to properly use and understand chip-seq analysis with DiffBind ?
diffbind R chip-seq written 10 weeks ago by pierre.marin • 0
0
votes
1
answer
76
views
1
answer
dba.report() output counts
diffbind written 11 weeks ago by Shamaine • 0 • updated 11 weeks ago by Rory Stark • 2.6k
0
votes
1
answer
133
views
1
answer
Blocking factors for differential binding analysis with DiffBind
diffbind written 6 months ago by Mthabisi Moyo • 10 • updated 11 weeks ago by Rory Stark • 2.6k
1
vote
1
answer
107
views
1
answer
Is there a way to run Diffbind without the normalization ?
diffbind differential binding analysis written 4 months ago by Thomas • 10 • updated 11 weeks ago by Rory Stark • 2.6k
1
vote
1
answer
165
views
1
answer
DiffBind confuses coordinates of peaks
diffbind atacseq written 3 months ago by gtechbio • 0 • updated 11 weeks ago by Rory Stark • 2.6k
1
vote
2
answers
128
views
2
answers
How to get the list of genes from DiffBind dba.report or dba.peakset
diffbind written 4 months ago by Bordiya • 0
1
vote
1
answer
130
views
1
answer
How to get peaks summit using dba.peakset
diffbind written 3 months ago by Udi Landau • 30 • updated 3 months ago by Rory Stark • 2.6k
1
vote
1
answer
255
views
1
answer
ChipQC not loading files
diffbind chipqc written 4 months ago by avp25 • 0 • updated 4 months ago by Thomas Carroll • 400
1
vote
1
answer
100
views
1
answer
DESeq2 for ChIP-seq
diffbind deseq2 written 4 months ago by bioinfo • 0 • updated 4 months ago by Michael Love ♦ 20k
0
votes
1
answer
90
views
1
answer
DiffBind: dba.overlap error
diffbind dba.overlap written 4 months ago by romicakerketta • 0
1
vote
1
answer
154
views
1
answer
Question of DiffBind for ChIP-Seq analysis
diffbind written 4 months ago by mengm5 • 0 • updated 4 months ago by Rory Stark • 2.6k
5
votes
1
answer
200
views
1
answer
DESeq2 baseMean from DiffBind summarizedExperiment
diffbind deseq2 summarizedexperiment basemean written 4 months ago by rbronste • 60
2
votes
2
answers
184
views
2
answers
Differential ChIP-seq analysis
diffbind csaw written 5 months ago by bioinfo • 0 • updated 5 months ago by Rory Stark • 2.6k
0
votes
0
answers
137
views
0
answers
DiffBind different read counts depending on dba.count scores specified
diffbind written 6 months ago by Lauma R • 0
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