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0
votes
0
answers
20
views
0
answers
DEXSeq 1.26.0 running very slowly (stuck?)
dexseq written 1 day ago by Lance Parsons • 0
0
votes
1
answer
112
views
1
answer
DEXSeqHTML getListElement GRanges error
dexseq software error bug written 5 weeks ago by Lance Parsons • 0 • updated 28 days ago by nitesh.turaga ♦ 130
1
vote
1
answer
164
views
1
answer
Plotting Expression of Differential Transcripts plotDEXseq
dexseq stager rnaseqdtu written 9 weeks ago by rbenel • 0 • updated 8 weeks ago by Michael Love ♦ 20k
0
votes
0
answers
98
views
0
answers
Preparation of summarizedExperiment for dexSeq
genomicfeatures genomicranges dexseq genomicalignments written 9 weeks ago by A • 10
0
votes
0
answers
58
views
0
answers
How to use DEXSeq processing whole genome (~650k exons/counting bins) and many samples? Can I process per 100 genes (or more) a batch until it covers all exons?
dexseq written 10 weeks ago by slowsmile820 • 0
6
votes
1
answer
149
views
1
answer
Kallisto output with DEXSeq
dexseq kallisto nh_tag written 10 weeks ago by j2h2k2 • 0 • updated 10 weeks ago by Alejandro Reyes • 1.6k
4
votes
2
answers
113
views
2
answers
DEXSeq and DRIMSeq on paired samples?
dexseq drimseq written 12 weeks ago by zoe.ward • 0 • updated 12 weeks ago by gosia.nowicka • 30
0
votes
2
answers
5.3k
views
2
answers
deseq2: convert ensembl ID to gene symbol.
dexseq deseq2 written 4.4 years ago by Fabrice Tourre • 970 • updated 4 months ago by hamidreza_moazzeni20 • 0
1
vote
1
answer
126
views
1
answer
Dexseq output interpretation
dexseq written 4 months ago by yelekley7 • 10 • updated 4 months ago by jennaburton.j • 0
3
votes
0
answers
141
views
0
answers
DEXSeq analysis with large number of samples
dexseq estimatedispersions written 5 months ago by nemanja.vucic • 10 • updated 5 months ago by Michael Love ♦ 20k
0
votes
1
answer
207
views
1
answer
DEXSeq: Error running dexseq_prepare_annotation.py
dexseq written 5 months ago by suzanne11 • 0 • updated 5 months ago by Alejandro Reyes • 1.6k
3
votes
2
answers
274
views
2
answers
Subread FeatureCounts for Exon level quantification: Length estimate for Exons as low as 1 base-pair
rnaseq dexseq featurecounts subread written 5 months ago by jennyl.smith12 • 0 • updated 5 months ago by Gordon Smyth ♦ 35k
1
vote
1
answer
104
views
1
answer
DEXseq with technical replicates
dexseq written 5 months ago by g.e.novakovsky • 0 • updated 5 months ago by Alejandro Reyes • 1.6k
1
vote
1
answer
162
views
1
answer
DEXSeq time course design
dexseq differential exon usage written 6 months ago by A • 10 • updated 6 months ago by Alejandro Reyes • 1.6k
0
votes
0
answers
127
views
0
answers
Need to read in DEXSeqResults object to R from csv
dexseq written 6 months ago by cjm • 0
0
votes
1
answer
161
views
1
answer
Interaction effect sizes from DEXseq
dexseq multiple factor design written 7 months ago by stuart • 0 • updated 7 months ago by Alejandro Reyes • 1.6k
1
vote
2
answers
500
views
6 follow
2
answers
DEXSeq - dexseq_count.py issue
genomicfeatures dexseq dexseq_count written 9 months ago by marija.durdevic • 0 • updated 8 months ago by hazards • 0
0
votes
0
answers
191
views
0
answers
Annotation of DEXSeqHTML with biomaRt
biomart dexseq written 8 months ago by Matthew Thornton • 290
0
votes
0
answers
176
views
0
answers
Metadata sheet for DEXSeq analysis
dexseq granges summarizeoverlaps isoforms differential isoform usage written 8 months ago by A • 10
0
votes
0
answers
219
views
0
answers
How to use TRT function of DEXSeq in svn? How to use TRT function of DEXSeq in R?
rnaseq dexseq written 10 months ago by giwengtein • 0
0
votes
0
answers
182
views
0
answers
DEXSeq showing error with .bam files from HISAT
rnaseq dexseq hisat written 11 months ago by giwengtein • 0
0
votes
0
answers
218
views
0
answers
Interpreting the EstimateDispersion plot from the DEXSeq package
dexseq estimatedispersions written 11 months ago by brand • 0
0
votes
0
answers
306
views
0
answers
Plot the normalized exon counts by exon length in DEXSeq
dexseq plotdexseq written 12 months ago by tanerarslan.gen • 0
0
votes
0
answers
276
views
0
answers
DEXseq: error using DEXSeqDataSetFromSE command
rnaseq dexseq summarizedexperiment written 12 months ago by f.carlisle • 0
2
votes
1
answer
351
views
1
answer
DEXSeqHTML and biomart object
dexseq written 13 months ago by ZheFrench • 10 • updated 12 months ago by Alejandro Reyes • 1.6k
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