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0
votes
1
answer
114
views
1
answer
Issue with DESeqDataSetFromMatrix
rnaseq affy deseq2 deseqdatasetfrommatrix written 9 days ago by matthew.sinton • 0 • updated 9 days ago by Michael Love ♦ 20k
2
votes
1
answer
60
views
1
answer
Error in get(cdfname, object 'mm430mmentrezgcdf' not found
cdf affy rma written 4 weeks ago by Walter Jessen • 0 • updated 4 weeks ago by Guido Hooiveld • 2.3k
1
vote
1
answer
112
views
1
answer
Normalize the raw data from multiple studies
normalization affy written 3 months ago by mahm • 20
1
vote
1
answer
262
views
1
answer
Using Limma to normalize data sets
affy limma written 3 months ago by mahm • 20 • updated 3 months ago by thokall • 120
0
votes
0
answers
111
views
0
answers
Finding/Understanding Affy 6.0 Annotation File
snp microarray affy affymetrix written 4 months ago by CantExitVIM • 10
0
votes
1
answer
140
views
1
answer
Why some packages don't work?
affy software error bioconductor written 5 months ago by marco.esposito • 0 • updated 5 months ago by Axel Klenk • 920
1
vote
0
answers
164
views
0
answers
Affe package mas5 error
affy affy mas5 written 6 months ago by yuyingxie • 0
2
votes
1
answer
137
views
1
answer
Affy's exprs not working.. intensity works..
affy intensity exprs written 6 months ago by elmira.amiri • 0 • updated 6 months ago by James W. MacDonald ♦ 48k
0
votes
0
answers
164
views
0
answers
Error: 'unknown input format' while trying http://bioconductor.org/packages/3.7/bioc
affy oligo error written 7 months ago by kritikamish99 • 10
4
votes
1
answer
185
views
1
answer
fRMA results different for Windows and Linux
affy frma gene expression data expr written 7 months ago by osieman52 • 0 • updated 7 months ago by James W. MacDonald ♦ 48k
1
vote
1
answer
207
views
1
answer
affymetrix miRNA microarray analysis, (package mirna30cdf)
microarray affy written 8 months ago by english.server • 0 • updated 8 months ago by James W. MacDonald ♦ 48k
0
votes
1
answer
314
views
1
answer
Can't Use "getGEO" Command Function in R Program
microarray affy software error R bioconductor written 8 months ago by drobinson289 • 0 • updated 8 months ago by James W. MacDonald ♦ 48k
0
votes
2
answers
215
views
2
answers
How to bypass ReadAffy warning
affy written 8 months ago by joseph.a.white1 • 0
0
votes
2
answers
1.6k
views
2
answers
error ReadAffy
arabidopsis thaliana cdf affy gcrma process oligo xps written 4.9 years ago by nooshin • 290 • updated 8 months ago by joseph.a.white1 • 0
2
votes
1
answer
176
views
1
answer
Issue with 'Could not obtain CDF environment' after attempting to extract information out of an AffyBatch object
cdf affy .cel written 8 months ago by maxime.vanhaeverbeke • 0 • updated 8 months ago by James W. MacDonald ♦ 48k
1
vote
1
answer
285
views
1
answer
How to process Affymetrix HT HG-U133+ PM Array Plate
preprocessing affy affymetrix microarrays written 9 months ago by Agaz Hussain Wani • 260 • updated 9 months ago by Guido Hooiveld • 2.3k
2
votes
3
answers
299
views
3
answers
hgu133plus2hsentrezgcdf or hgu133ahsentrezgcdf packages not installing
hgu133a affy frma readaffy package installation written 9 months ago by Chris Mancuso • 0
0
votes
1
answer
201
views
1
answer
AffyBatch and ArrayExpress
affy arrayexpress bugs written 9 months ago by Ed Siefker • 220 • updated 9 months ago by James W. MacDonald ♦ 48k
0
votes
2
answers
961
views
2
answers
Affymetrix Mogene 1 0 ST
annotation normalization affy written 10.0 years ago by Al Ivens • 30 • updated 9 months ago by gil.hornung • 0
1
vote
1
answer
320
views
1
answer
AffyLib query in topGO
affy topgo written 10 months ago by User • 0 • updated 10 months ago by James W. MacDonald ♦ 48k
7
votes
5
answers
454
views
5
answers
Microarray analysis using RMA method using affy, limma
microarray annotation affy aureus written 10 months ago by neranjan007 • 0
0
votes
0
answers
202
views
0
answers
Interpreting Affymetrix Human Genome U133 Plus 2.0 samples
affy cel gene expression gene expression data affymatrix written 10 months ago by torgeirous • 0
0
votes
1
answer
241
views
1
answer
Affy ClariomD human transcriptome annotation
annotation affy pd.clariom.d.human written 11 months ago by anitabaery • 0 • updated 11 months ago by James W. MacDonald ♦ 48k
0
votes
1
answer
306
views
1
answer
Processing array with R
cdf affy software error R written 11 months ago by Charlie • 0 • updated 11 months ago by James W. MacDonald ♦ 48k
4
votes
2
answers
571
views
2
answers
How to use custom cdf "hgu133plus2hsentrezgcdf"?
customcdf hgu133plus2 affy affymetrix microarrays written 11 months ago by rahil • 20
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