RCSB PDB

Quick Structural Alignment

The python implementation of the MMTF API, decoder and encoder.

Benchmarks for testing the symmetry package

The c/c++ implementation of the MMTF API, decoder and encoder.

🎡 Detect, analyze, and visualize protein symmetry

The javascript implementation of the MMTF format.

The java implementation of the MMTF API, decoder and encoder.

A JavaScript interactive contact map viewer

This repository contains MMTF file parsing benchmarks described in the paper "MMTF - an efficient file format for the transmission, visualization, and analysis of macromolecular structures".

This repository contains MMTF file parsing benchmarks described in the paper "MMTF - an efficient file format for the transmission, visualization, and analysis of macromolecular structures".

🌈 Create color blind friendly color palettes in Java

This repository contains the compression methods described in the paper "Towards an efficient compression of 3D coordinates of macromolecular structures".

The pure c++ implementation of the MMTF API, decoder and encoder.

The specification of the MMTF format for biological structures

supplemental material for a manuscript that is under review

A Census of Symmetry in Protein Structural DataSets

join

A repository of Zeppelin notebooks

📊 An (experimental) repository for sharing PDB data ready for data mining and analytics.

Convenience tools for working with Apache Spark in the context of PDB data.

Shell project to create binaries for symmetry executables

Search for subunits of tertiary psuedosymmetry that occur throughout fold space