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Featured Article
https://doi.org/10.12688/f1000research.12234.2
Opinion Article metrics
Revised
Developing data interoperability using standards: A wheat community use case [version 2; referees: 2 approved]
Esther Dzale Yeumo, Michael Alaux, Elizabeth Arnaud, Sophie Aubin, Ute Baumann, Patrice Buche, Laurel Cooper, Hanna Ćwiek-Kupczyńska, Robert P. Davey, Richard Allan Fulss, Clement Jonquet, Marie-Angélique Laporte, Pierre Larmande, Cyril Pommier, Vassilis Protonotarios, Carmen Reverte, Rosemary Shrestha, Imma Subirats, Aravind Venkatesan, Alex Whan, Hadi Quesneville
Referees Ramil Mauleon; Peter McQuilton
  • Funders
  • WheatIS Expert Working Group
  • Agence Nationale de la Recherche
  • Horizon 2020
  • National Science Foundation
PUBLISHED 06 Dec 2017
https://doi.org/10.12688/f1000research.16605.1
Software Tool Article metrics
KnetMaps: a BioJS component to visualize biological knowledge networks [version 1; referees: 1 approved]
Ajit Singh, Christopher J. Rawlings, Keywan Hassani-Pak
Referees Ian Dunham and Gareth Peat
  • Funder
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 17 Oct 2018
https://doi.org/10.12688/f1000research.16091.1
Data Note metrics
Germination rates of four Chilean forest trees seeds: Quillaja saponaria, Prosopis chilensis, Vachellia caven, and Caesalpinia spinosa [version 1; referees: 2 approved, 1 approved with reservations, 1 not approved]
Âlvaro Plaza, Miguel Castillo
Referees Gabriela Saldías; Madelaine Quiroz Espinoza; Diana Soriano; Rafael Rubio de Cases and Diego Escobar
  • Funders
  • Comisión Nacional de Investigación Científica y Tecnológica
  • Corporación Nacional Forestal
PUBLISHED 10 Sep 2018
https://doi.org/10.12688/f1000research.12344.2
Opinion Article metrics
Revised
Best practice data life cycle approaches for the life sciences [version 2; referees: 2 approved]
Philippa C. Griffin, Jyoti Khadake, Kate S. LeMay, Suzanna E. Lewis F1000Prime Section Head
, Sandra Orchard, Andrew Pask, Bernard Pope, Ute Roessner, Keith Russell, Torsten Seemann, Andrew Treloar, Sonika Tyagi, Jeffrey H. Christiansen, Saravanan Dayalan, Simon Gladman, Sandra B. Hangartner, Helen L. Hayden, William W.H. Ho, Gabriel Keeble-Gagnère, Pasi K. Korhonen, Peter Neish, Priscilla R. Prestes, Mark F. Richardson, Nathan S. Watson-Haigh, Kelly L. Wyres, Neil D. Young, Maria Victoria Schneider
Referees Johannes Starlinger; Sven Nahnsen
  • Funders
  • Bioplatforms Australia
  • University of Melbourne
PUBLISHED 04 Jun 2018
https://doi.org/10.12688/f1000research.14561.1
Software Tool Article metrics
­­­A web resource for nutrient use efficiency-related genes, quantitative trait loci and microRNAs in important cereals and model plants [version 1; referees: 2 approved]
Anuj Kumar, Ajay Pandeya, Girik Malik, Mansi Sharma, Hima Kumari P., Anil Kumar S., Vijay Gahlaut, M.N.V. Prasad Gajula, Krishna Pal Singh, Prashanth Suravajhala, Harindra Singh Balyan, Pushpendra K. Gupta
Referees Rajib Bandopadhyay; Vishal Acharya
PUBLISHED 29 May 2018
https://doi.org/10.12688/f1000research.12817.2
Research Article metrics
Revised
Evaluation of predicted Medfly (Ceratitis capitata) quarantine length in the United States utilizing degree-day and agent-based models [version 2; referees: 3 approved]
Travis Collier, Nicholas Manoukis
Referees Teresa Vera; Daniel M. Borchert; John M. Kean
  • Funders
  • Headquarters Research Associate program (TCC)
  • U.S. Department of Agriculture
PUBLISHED 06 Mar 2018
https://doi.org/10.12688/f1000research.12867.2
Research Note metrics
Revised
Draft genomes of two Australian strains of the plant pathogen, Phytophthora cinnamomi [version 2; referees: 3 approved]
Amy L. Longmuir, Peter L. Beech, Mark F. Richardson
Referees Nicolás Daniel Ayub; Erik Andreasson and Laura Grenville Briggs; David J. Studholme
PUBLISHED 28 Feb 2018
https://doi.org/10.12688/f1000research.13044.1
Research Article metrics
Global Open Data in Agriculture and Nutrition (GODAN) initiative partner network analysis [version 1; referees: 2 approved with reservations]
Ruthie Musker, Ben Schaap
Referees Karel Charvat; Joel Gurin
  • Funders
  • Ministry of Economic Affairs, Dutch Government
  • U.S. Department of Agriculture
  • Department for International Development, UK Government
  • Food and Agriculture Organization of the United Nations
PUBLISHED 11 Jan 2018
https://doi.org/10.12688/f1000research.13541.1
Software Tool Article metrics
archiDART v3.0: A new data analysis pipeline allowing the topological analysis of plant root systems [version 1; referees: 2 approved, 1 approved with reservations]
Benjamin M. Delory, Mao Li, Christopher N. Topp, Guillaume Lobet
Referees Magdalena M. Julkowska; Alexander Bucksch; Nathan D. Miller
  • Funder
  • Leuphana University
PUBLISHED 08 Jan 2018
https://doi.org/10.12688/f1000research.12414.2
Data Note metrics
Revised
First de novo draft genome sequence of Oryza coarctata, the only halophytic species in the genus Oryza [version 2; referees: 3 approved]
Tapan Kumar Mondal, Hukam Chand Rawal, Kishor Gaikwad, Tilak Raj Sharma, Nagendra Kumar Singh
Referees Sandip Das; Stephen P. Moose; Kashmir Singh
PUBLISHED 15 Dec 2017
https://doi.org/10.12688/f1000research.12649.1
Research Article metrics
The evolution of knowledge in sericultural research as observed through a science mapping approach [version 1; referees: 2 approved with reservations]
Giselle Zambrano-Gonzalez, Gustavo Ramirez-Gonzalez, Martha I. Almanza-P
Referees Manuel Jesus Cobo; Olga Scrivner
PUBLISHED 30 Nov 2017
https://doi.org/10.12688/f1000research.11301.2
Software Tool Article metrics
Revised
Introducing the Brassica Information Portal: Towards integrating genotypic and phenotypic Brassica crop data [version 2; referees: 3 approved]
Annemarie H. Eckes, Tomasz Gubała, Piotr Nowakowski, Tomasz Szymczyszyn, Rachel Wells, Judith A. Irwin, Carlos Horro, John M. Hancock, Graham King, Sarah C. Dyer, Wiktor Jurkowski
Referees Christopher J. Rawlings; Cyril Pommier; Matthew M. Nelson
  • Funders
  • Horizon 2020
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 15 Nov 2017
https://doi.org/10.12688/f1000research.12858.1
Data Note metrics
Updated mtCOI reference dataset for the Bemisia tabaci species complex [version 1; referees: 2 approved]
Laura M. Boykin, Anders Savill, Paul De Barro
Referees Renate Krause Sakate; Sharad Saurabh and Manisha Mishra
PUBLISHED 13 Oct 2017
https://doi.org/10.12688/f1000research.11179.2
Research Article metrics
Revised
Improving agricultural knowledge management: The AgTrials experience [version 2; referees: 2 approved]
Glenn Hyman, Herlin Espinosa, Paola Camargo, David Abreu, Medha Devare, Elizabeth Arnaud, Cheryl Porter, Leroy Mwanzia, Kai Sonder, Sibiry Traore
Referees Anne-Françoise Adam-Blondon; Ruth Bastow
  • Funders
  • United States Agency for International Development
  • CGIAR Fund
PUBLISHED 09 Oct 2017
https://doi.org/10.12688/f1000research.12216.1
Research Article metrics
Using sheep genomes from diverse U.S. breeds to identify missense variants in genes affecting fecundity [version 1; referees: 2 approved]
Michael P. Heaton, Timothy P.L. Smith, Bradley A. Freking, Aspen M. Workman, Gary L. Bennett, Jacky K. Carnahan, Theodore S. Kalbfleisch
Referees Christine Couldrey; Eyal Seroussi
  • Funder
  • U.S. Department of Agriculture
PUBLISHED 02 Aug 2017
https://doi.org/10.12688/f1000research.11859.2
Data Note metrics
Revised
Draft genome sequencing of the sugarcane hybrid SP80-3280 [version 2; referees: 2 approved]
Diego Mauricio Riaño-Pachón, Lucia Mattiello
Referees Jason Miller; Chakravarthi Mohan
  • Funders
  • Centro Nacional de Processamento de Alto Desempenho em São Paulo
  • Brazilian Bioethanol Science and Technology Laboratory
  • Fundação de Amparo à Pesquisa do Estado de São Paulo
PUBLISHED 03 Jul 2017
https://doi.org/10.12688/f1000research.11629.1
Data Note metrics
Initial genome sequencing of the sugarcane CP 96-1252 complex hybrid [version 1; referees: 2 approved]
Jason R. Miller, Kari A. Dilley, Derek M. Harkins, Manolito G. Torralba, Kelvin J. Moncera, Karen Beeri, Karrie Goglin, Timothy B. Stockwell, Granger G. Sutton, Reed S. Shabman
Referees Paulo Arruda; Jeremy R. Shearman
  • Funder
  • U.S. Department of Homeland Security
PUBLISHED 17 May 2017
https://doi.org/10.12688/f1000research.11638.1
Method Article metrics
Semantics for interoperability of distributed data and models: Foundations for better-connected information [version 1; referees: 2 approved with reservations]
Ferdinando Villa, Stefano Balbi, Ioannis N. Athanasiadis, Caterina Caracciolo
Referees Carole A. Goble F1000Research Advisory Board member
; Pier Luigi Buttigieg
  • Funders
  • Ecosystem Services for Poverty Alleviation
  • Horizon 2020
  • National Science Foundation
PUBLISHED 17 May 2017
https://doi.org/10.12688/f1000research.10041.1
Software Tool Article metrics
Expresso: A database and web server for exploring the interaction of transcription factors and their target genes in Arabidopsis thaliana using ChIP-Seq peak data [version 1; referees: 2 approved, 1 approved with reservations]
Delasa Aghamirzaie, Karthik Raja Velmurugan, Shuchi Wu, Doaa Altarawy, Lenwood S. Heath, Ruth Grene
Referees Nicholas J. Provart; Asa Ben-Hur; Sakiko Okumoto
  • Funder
  • National Science Foundation
PUBLISHED 28 Mar 2017
https://doi.org/10.12688/f1000research.10497.1
Opinion Article metrics
Prima facie reasons to question enclosed intellectual property regimes and favor open-source regimes for germplasm [version 1; referees: 3 approved, 1 approved with reservations]
Madeleine-Thérèse Halpert, M. Jahi Chappell
Referees Sheryl D. Breen; William F. Tracy; Sue Farran; Guntra A. Aistara and Ana Ruth Martinez Rizo
PUBLISHED 17 Mar 2017
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