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Lior Pachter
@
lpachter
Pasadena, CA
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Bren Professor of Computational Biology at Caltech. Blog at liorpachter.wordpress.com. #methodsmatter
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Lior Pachter
@lpachter
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4 ಗಂ. |
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A quick #Brexit on account of drones.
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| Lior Pachter ಮರುಟ್ವೀಟಿಸಿದ್ದಾರೆ | ||
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Julianne Dalcanton
@dalcantonJD
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ಡಿಸೆಂ 19 |
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So why is this result nifty? (1/N) twitter.com/arXiver/status…
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| Lior Pachter ಮರುಟ್ವೀಟಿಸಿದ್ದಾರೆ | ||
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Rahul Satija
@satijalab
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20 ಗಂ. |
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Our Cell Hashing work w/@NYGCtech is out @GenomeBiology! Check out a few awesome experimental approaches for scRNA-seq multiplexing:
- biorxiv.org/content/early/… (@lpachter)
- biorxiv.org/content/early/… (Gartner Lab)
- biorxiv.org/content/early/… (@morris_lab)
- genomebiology.biomedcentral.com/articles/10.11…
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| Lior Pachter ಮರುಟ್ವೀಟಿಸಿದ್ದಾರೆ | ||
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Yoav Gilad
@Y_Gilad
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ಡಿಸೆಂ 18 |
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With the recent onslaught of posts about the randomness and capricious nature of NIH reviews, I'd like to make a few statements. I agree that the review process is far from optimal, but I do not think it is the random process that many seem to believe:
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Lior Pachter
@lpachter
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ಡಿಸೆಂ 18 |
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How to write a paper in four minutes liorpachter.wordpress.com/2018/12/18/how… pic.twitter.com/ztohJh3HAG
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Lior Pachter
@lpachter
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ಡಿಸೆಂ 18 |
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An interesting single-cell study of X-inactivation focusing on the identification of escapees via allele-specific expression analysis. pnas.org/content/early/…
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| Lior Pachter ಮರುಟ್ವೀಟಿಸಿದ್ದಾರೆ | ||
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bioRxiv
@biorxivpreprint
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ಡಿಸೆಂ 18 |
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Whole blood transcriptome analysis in bipolar disorder reveals strong lithium effect biorxiv.org/cgi/content/sh… #bioRxiv
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| Lior Pachter ಮರುಟ್ವೀಟಿಸಿದ್ದಾರೆ | ||
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Adrienne Porter Felt
@__apf__
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ಡಿಸೆಂ 15 |
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I've always joked that, if my husband and I were hit by a bus, the headline would read "Google Engineer and woman hit by a bus." Except it's not funny because it's true twitter.com/washingtonpost…
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| Lior Pachter ಮರುಟ್ವೀಟಿಸಿದ್ದಾರೆ | ||
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Jóhannes Guðbrandsson
@vonStadarhraun
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ಡಿಸೆಂ 10 |
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New preprint from our group. Personal favourite from my upcoming thesis.
biorxiv.org/content/early/…
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Lior Pachter
@lpachter
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ಡಿಸೆಂ 16 |
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Design elements reflecting the importance of... chalk. An @InteriorDesign article on the Roland and Maxine Hall of Mathematics and Physics @Caltech interiordesign.net/projects/15744…
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Lior Pachter
@lpachter
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ಡಿಸೆಂ 16 |
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There’s also... twitter.com/lpachter/statu…
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Lior Pachter
@lpachter
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ಡಿಸೆಂ 16 |
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This .txt -> .xls -> .m gymnastics is ridiculous but interestingly @MATLAB is more popular as a language for single-cell genomics analysis than C/C++. See @_lazappi_, @BelindaPhipson and @AliciaOshlack: journals.plos.org/ploscompbiol/a…
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Lior Pachter
@lpachter
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ಡಿಸೆಂ 16 |
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Running the demo code for this paper requires (1) downloading a large text file. Then (2) loading it in #Excel so it can be saved as a .xls file so that (3) a @Matlab program provided by the authors can parse the .xls file. #butpeerreview
academic.oup.com/bioinformatics…
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Lior Pachter
@lpachter
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ಡಿಸೆಂ 15 |
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It's actually a terrible article. See liorpachter.wordpress.com/2018/09/17/mat…
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Lior Pachter
@lpachter
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ಡಿಸೆಂ 15 |
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What happens in academia? The link you posted is to an article that is a sham. liorpachter.wordpress.com/2018/09/17/mat…
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Lior Pachter
@lpachter
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ಡಿಸೆಂ 15 |
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The Quillette article was a sham. They didn't even speak to anyone other than the author liorpachter.wordpress.com/2018/09/17/mat…
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Lior Pachter
@lpachter
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ಡಿಸೆಂ 15 |
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Your characterization of what happened is false. In fact, an editor of a math journal hijacked his journal for political reasons. Fortunately he didn't get away with it. There was no paper "struck from the scientific record" and there were no "activists". liorpachter.wordpress.com/2018/09/17/mat…
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| Lior Pachter ಮರುಟ್ವೀಟಿಸಿದ್ದಾರೆ | ||
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Dr. Izabella Laba
@ilaba
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ಡಿಸೆಂ 14 |
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"goes to show the divide between the way universities market the advancement of women in STEM to the public, compared to the actual experiences of women in these fields."
I'm not going to disagree.
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| Lior Pachter ಮರುಟ್ವೀಟಿಸಿದ್ದಾರೆ | ||
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James R. Howe 🐭
@jamesrhowe6
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ಡಿಸೆಂ 14 |
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Probably not a good idea to impute single cell RNA-seq data... neuron-specific marker VGlut2/Slc17a6 is expressed at low levels in every single CNS cell cluster after SAVER imputation pic.twitter.com/o7bL8JODOH
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Lior Pachter
@lpachter
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ಡಿಸೆಂ 14 |
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Interesting paper focusing on extensive splicing dysregulation evident in RNA-seq from post-mortem brains of individuals with psychiatric disorders. science.sciencemag.org/content/362/64…
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