| Genome |
| Ensembl |
Genome databases for vertebrates and other eukaryotic species. |
| MITOMAP |
A curated repository of published and unpublished data on human mitochondrial DNA variation. |
| NCBI Map Viewer |
Detailed views of the complete genomes of selected organisms from vertebrates to protozoa. |
| UCSC |
UCSC Genome Browser; reference sequences and working draft assemblies for a large collection of genomes. |
|
| DNA |
| Ensembl |
Transcript-based views for coding and noncoding DNA. |
| NCBI RefSeq |
A collection of genome, gene, and transcript sequence data from several sources, including GenBank, RefSeq. |
| UCSC |
UCSC Genome Browser; reference sequences and working draft assemblies for a large collection of genomes. |
|
| Protein |
| HPRD |
The Human Protein Reference Database; manually extracted and visually depicted information on human proteins. |
| UniProt |
Comprehensive protein sequence and functional information, including supporting data. |
|
| Gene Info |
| BioGPS |
The Gene Portal Hub; customizable portal of gene and protein function information. |
| Ensembl |
Orthologs, paralogs, regulatory regions, and splice variants. |
| GeneCards |
The Human Genome Compendium; web-based cards integrating automatically mined information on human genes. |
| Gene Ontology |
Terms, defined using controlled vocabulary, representing gene product properties (biologic process, cellular component, molecular function) across species. |
| HGNC |
HUGO Gene Nomenclature Committee. |
| KEGG |
Kyoto Encyclopedia of Genes and Genomes; diagrams of signaling pathways. |
| NCBI Gene |
Gene-specific map, sequence, expression, structure, function, citation, and homology data. |
| PharmGKB |
Pharmacogenomics Knowledge Base; curated and annotated information regarding the effects of human genetic variations on drug response. |
| UCSC |
UCSC Genome Bioinformatics; gene-specific structure and function information with links to other databases. |
|
| Clinical |
| ClinGen Dosage |
A ClinGen curated resource of genes and regions of the genome that are dosage sensitive and should be targeted on a cytogenomic array. |
| ClinicalTrials.gov |
A registry of federally and privately supported clinical trials conducted in the United States and around the world. |
| DECIPHER |
Database of chromosomal aberration including clinical and genomic information. |
| EuroGentest |
A list of European laboratories that offer genetic testing. |
| GARD |
Genetic and Rare Diseases Information Center; information on rare and/or genetic disorders including portal to clinician and patient resources. |
| Gene Tests |
Information on genetic testing and its use in diagnosis, management, and genetic counseling. |
| Gene Reviews |
Expert-authored, peer-reviewed descriptions of inherited disorders including the uses of genetic testing in diagnosis, management, and genetic counseling. |
| Genetic Alliance |
Network of disease-specific advocacy organizations, universities, private companies, government agencies, and public policy organizations. |
| GTR |
Genetic Testing Registry. |
| OrphaNet |
European reference portal for information on rare diseases and orphan drugs. |
| Newborn Screening |
Information and resources for newborn screening and genetics. |
| NextGxDx |
NextGxDx. |
| POSSUM |
A dysmorphology database of multiple malformations; metabolic, teratogenic, chromosomal, and skeletal syndromes; and their images. |
|
| Variation |
| ClinVar |
ClinVar aggregates information about sequence variation and its relationship to human health. |
| ExAC Beta |
Exome Aggregation Consortium (ExAC) browser, Broad Institute. |
| GWAS Catalog |
GWAS Catalog; NHGRI-EBI Catalog of published genome-wide association studies. |
| GWAS Central |
GWAS Central; summary level genotype-to-phenotype information from genetic association studies. |
| HGMD |
Human Gene Mutation Database; published mutations causing or associated with human inherited disease; disease-associated/functional polymorphisms. |
| HGVS |
Human Genome Variation Society; maintains lists of and links to locus-specific mutation databases; guidelines for description of sequence variants. |
| inSIGHT |
International Society for Gastrointestinal Hereditary Tumors. |
| Locus Specific DBs |
A gene-specific database of variation. |
| LOVD |
Colon cancer gene variant databases. |
| NHLBI EVS |
National Heart, Lung, and Blood Institute Exome Variant Server. |
| 1000 Genome |
1000 Genome - A deep catalog of human genetic variation. |
|
| Animal Models |
| FlyBase |
A Database of Drosophila Genes and Genomes. |
| IMPC |
International Mouse Phenotyping Consortium. |
| KOMP |
Knockout Mouse Project Repository; mouse embryonic stem cells containing null mutations in every gene in the mouse genome. |
| MGI Mouse Gene |
Mouse Genome Informatics; international database resource for the laboratory mouse, including integrated genetic, genomic, and biological data. |
| MGI Mouse Phenotype |
Phenotypes, alleles, and disease models from Mouse Genome Informatics. |
| NCBI HomoloGene |
A system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes. |
| OMIA |
Online Mendelian Inheritance in Animals (OMIA) is a database of genes, inherited disorders and traits in 191 animal species (other than human and mouse.) |
| Wormbase Gene |
Database of the biology and genome of Caenorhabditis elegans and related nematodes. |
| ZFin |
The Zebrafish Model Organism Database. |
|
| Cell Lines |
| Coriell |
Coriell Cell Repositories; cell cultures and DNA derived from cell cultures. |
|
| Pathways |
| KEGG |
Kyoto Encyclopedia of Genes and Genomes; diagrams of signaling pathways. |
| Reactome |
Protein-specific information in the context of relevant cellular pathways. |