NCI GDC

New copy number variation files generated using GISTIC2 now available for download. See Data Release 14.0 Notes: https://docs.gdc.cancer.gov/Data/Release_Notes/Data_Release_Notes/ …pic.twitter.com/gLhhUpwaG6

With @theNCI’s Genomic Data Commons, researchers can access over 3 PB of #bigData from #TCGA, #TARGET, #APOLLO and other large-scale genomic characterization projects https://portal.gdc.cancer.gov/ pic.twitter.com/HMwqFsRe9L

Visualize different levels of copy number loss and gain in the cases and genes most frequently altered in the updated OncoGrid https://portal.gdc.cancer.gov/exploration?searchTableTab=oncogrid …pic.twitter.com/GoFXqgS5Sf

Hg38 annotations for Infinium DNA methylation arrays available in GDC’s Community Tools: https://gdc.cancer.gov/access-data/gdc-community-tools …pic.twitter.com/XccvKzRFlG

Visualize copy number variations—types, locations, and frequencies—directly in the data portal https://portal.gdc.cancer.gov pic.twitter.com/IayhN9ab1q

Customize colors to display mutations and CNVs in the GDC OncoGrid: https://portal.gdc.cancer.gov/exploration?searchTableTab=oncogrid …pic.twitter.com/YFmoYX0JGn

GDC Users! The GDC has scheduled maintenance on Saturday 11/17 and will not be available during this periodpic.twitter.com/Nzk54fCv8i

GDC Submitters! New GDC Metadata Validation Service (MVS) Tool to assist in mapping submitter metadata to the GDC Data Dictionary: https://docs.gdc.cancer.gov/Data_Dictionary/gdcmvs/ …pic.twitter.com/p4cnhU8O9o

Updates to our data portal released today include visualizations of copy number alterations. See release notes: https://docs.gdc.cancer.gov/Data_Portal/Release_Notes/Data_Portal_Release_Notes/ …pic.twitter.com/NhaFuLwBxW

Data from The Chromatin Accessibility Landscape of Primary Human Cancers (TCGA ATAC-Seq) @sciencemagazine publication is available for download in the GDC: https://gdc.cancer.gov/about-data/publications/ATACseq-AWG …pic.twitter.com/lm21FeiVoa

Search for data by standardized clinical properties, including primary site and disease type: https://portal.gdc.cancer.gov/projects pic.twitter.com/JHpdgzEV5e

New publication pages with associated data for #TARGET #childhoodcancer studies available https://gdc.cancer.gov/about-data/publications#/?groups=TARGET&years=2018,2017&order=desc …pic.twitter.com/Ud6nog5fxV

GDC’s @bobgrossman will be giving a keynote on how data commons support research at #TechEX18 on Thursday 10/17 https://meetings.internet2.edu/2018-technology-exchange/program-guide/featured-speaker/ …pic.twitter.com/dBTJmUs4dr

GDC Users! The GDC has scheduled maintenance on 10/13 and will not be available during this periodpic.twitter.com/YugjKywRME

Data from this @NEJM publication on the genetics of diffuse large B-cell #lymphoma is available for download in the GDC: https://gdc.cancer.gov/about-data/publications/DLBCL-2018 …pic.twitter.com/0sRyRIjHmO

Aligned WGS data from #TARGET and @DeptofDefense/@DeptVetAffairs/@theNCI’s collaboration #APOLLO is now available. See Data Release 13.0 Notes: https://docs.gdc.cancer.gov/Data/Release_Notes/Data_Release_Notes/ …pic.twitter.com/k0utrypm08

Data from this DLBCL study is now available in the GDC Data Portal: http://bit.ly/2N6K1Nc pic.twitter.com/oWD3pF4mfV

What can you do with the GDC? View case counts per data category for each project in an interactive graph: https://portal.gdc.cancer.gov/projects?projectsTableTab=graph …pic.twitter.com/KgNd5IKAVF