Coloring methods in Multiple Alignment View

Introduction

This tutorial will serve as a consolidation space for all existing help on Coloring methods in Multiple Sequence Alignment View.

Open the example file (Open - File Import). Set the File Format drop-down to "Text Alignment files".

Click Next twice, then Finish, leaving the default settings. New project will be added to your workspace.

Right-click the new project and select Open New View command. New View menu will be displayed.

Click on the Multiple Alignment View. Multiple Alignment view will be displayed.

Select your region of interest an zoom to sequence.

Right-click anywhere in your region of interest and select Coloration - Select Method from the context menu.

Alignment Scoring Methods menu will be displayed.

Explore the following available scoring methods (described in detail in the Multiple Sequence Alignment Viewer documentation):

Current Version is 2.12.5 (released September 18, 2017)