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Krista Ternus retweetou
Marker genes are cool, but what about marker gene neighbors?! Another paper from the murky depths of my PhD dissertation:https://www.frontiersin.org/articles/10.3389/fmicb.2018.03053/full …
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Krista Ternus retweetou
Curious about CRISPR's day job as a microbial defense system? It only took me 5 years, but here's a survey of CRISPRs in the GOS and
@TaraExpeditions:https://www.biorxiv.org/content/early/2018/12/05/487884.article-metrics …Obrigado. O Twitter irá usar isso para melhorar sua timeline. DesfazerDesfazer -
Krista Ternus retweetou
KrakenUniq: confident and fast metagenomics classification using unique k-mer countshttps://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1568-0 …
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Krista Ternus retweetou
p.s. the next M3 will take place on Wednesday, January 9th (2019) at Johns Hopkins University (Homewood Campus). This Winter M3 will focus on Prediction and the Microbiome and will be hosted by Dr. Jocelyne DiRuggiero (https://bio.jhu.edu/directory/jocelyne-diruggiero/ …).
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Krista Ternus retweetou
The M3 meeting report is now out! https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-018-0582-5 …. Massive thanks to all of the amazing people that helped make M3 a success and a special shout out to the M3 advisory committee:
@andreaottesen.@subsurface_life,@DrRitaColwell,@JasonKralj_NIST & Dr. Jocelyne DiRuggiero.Mostrar esta sequênciaObrigado. O Twitter irá usar isso para melhorar sua timeline. DesfazerDesfazer -
Krista Ternus retweetou
HUMAnN2 for functional
#metagenomics: identifies a community's known species, aligns reads to their pangenomes, performs translated search on unclassified reads, quantifies gene families and pathways https://www.nature.com/articles/s41592-018-0176-y … http://huttenhower.sph.harvard.edu/humann2 cc@thedatanurse@KristaTernuspic.twitter.com/S6kZc9Xdhu
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Krista Ternus retweetou
When the moment I saw what one can learn from the long reads that is hard to see from other technologies, my passion was to bring it to true fruition. I am happy I was able to help a bit. Nice to see there is a possibility to get high quality human/all genomes soon for everyone.
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Krista Ternus retweetou
A
@UofMaryland research scientist is working with experts at@RiceUniversity and@genome_gov to improve search results of large DNA databases. Beneficial to#publichealth &#foodsafety https://go.umd.edu/genome#UMDdiscovers@GenomeBiology@UMDscience@UMDResearch@UMDCBCBpic.twitter.com/61th1N3VOW
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Krista Ternus retweetou
No
@Eagles takes from me today, our@GenomeBiology paper is up! Tidy analysis on how database growth is getting a bit unwieldy (for a few reasons):https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1554-6 …Mostrar esta sequênciaObrigado. O Twitter irá usar isso para melhorar sua timeline. DesfazerDesfazer -
Flood of genome data hinders efforts to ID bacteria http://news.rice.edu/2018/10/30/flood-of-genome-data-hinders-efforts-to-id-bacteria-2/#.W9iGQPlF-Dk.twitter …
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Krista Ternus retweetou
Great idea from
@traingene and@dnasko to look at all past RefSeq versions and show how Kraken classifications depend heavily on the database. Our new paper: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1554-6 …pic.twitter.com/5PYAQSeGPq
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Victors: a web-based knowledge base of virulence factors in human and animal pathogens https://www.ncbi.nlm.nih.gov/pubmed/30365026
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Krista Ternus retweetou
Register for our next meeting 11/14: "Biodefense Indicators: Progress in Implementing Key Elements of the National Blueprint for Biodefense." We'll focus on items the Panel felt the gov't could complete in the 3 years since releasing the Blueprint in 2015. https://bit.ly/2Sa7BMC
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BacCapSeq: a Platform for Diagnosis and Characterization of Bacterial Infectionshttps://mbio.asm.org/content/9/5/e02007-18 …
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Now would be an interesting time to sequence Austin's tap water...https://twitter.com/GlobalBioD/status/1054443225682006016 …
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Krista Ternus retweetou
Time to call a species and species! We think that this is a common sense approach to naming botulinum-toxin producing Clostridial bacteria and should replace the confusing group nomenclature frequently used now.https://mbio.asm.org/content/9/5/e01469-18 …
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Krista Ternus retweetou
Due to the high volume of questions, the CDRH Biothreat Challenge deadline has been extended to October 19! Please continue to ask questions and submit your responses at http://precision.fda.gov/challenges/3
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Krista Ternus retweetou
My lab's hiring a bioinformatics programmer. Come work in beautiful Flagstaff. Details: https://bit.ly/2DqUH9H Please RT!
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