The OBO Foundry

Download table as: [ YAML | JSON-LD | RDF/Turtle ]
bfo Basic Formal Ontology CC-BY The upper level ontology upon which OBO Foundry ontologies are built. Detail
chebi Chemical Entities of Biological Interest A structured classification of molecular entities of biological interest focusing on 'small' chemical compounds. Detail
doid Human Disease Ontology CC0 1.0 Universal An ontology for describing the classification of human diseases organized by etiology. Detail
go Gene Ontology CC-BY An ontology for describing the function of genes and gene products Detail
obi Ontology for Biomedical Investigations CC-BY An integrated ontology for the description of life-science and clinical investigations Detail
pato Phenotypic quality CC-BY An ontology of phenotypic qualities (properties, attributes or characteristics) Detail
po Plant Ontology CC-BY 4.0 The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data. Detail
pr PRotein Ontology (PRO) CC-BY An ontological representation of protein-related entities Detail
xao Xenopus anatomy and development CC-BY Anatomy and development of the African clawed frog (Xenopus laevis). Detail
zfa Zebrafish anatomy and development CC-BY A structured controlled vocabulary of the anatomy and development of the Zebrafish Detail
aeo Anatomical Entity Ontology AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology Detail
aero Adverse Event Reporting Ontology CC-BY The Adverse Event Reporting Ontology (AERO) is an ontology aimed at supporting clinicians at the time of data entry, increasing quality and accuracy of reported adverse events Detail
agro Agronomy Ontology CC-BY Ontology of agronomic practices, agronomic techniques, and agronomic variables used in agronomic experiments Detail
apo Ascomycete phenotype ontology A structured controlled vocabulary for the phenotypes of Ascomycete fungi Detail
bcgo Beta Cell Genomics Ontology CC-BY An application ontology built for beta cell genomics studies. Detail
bco Biological Collections Ontology An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys. Detail
bspo Biological Spatial Ontology CC-BY An ontology for respresenting spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces Detail
bto BRENDA tissue / enzyme source BRENDA license A structured controlled vocabulary for the source of an enzyme comprising tissues, cell lines, cell types and cell cultures. Detail
caro Common Anatomy Reference Ontology An upper level ontology to facilitate interoperability between existing anatomy ontologies for different species Detail
cdao Comparative Data Analysis Ontology CC0 1.0 Universal a formalization of concepts and relations relevant to evolutionary comparative analysis Detail
ceph Cephalopod Ontology CC-BY An anatomical and developmental ontology for cephalopods Detail
cheminf Chemical Information Ontology Includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them. Detail
chmo Chemical Methods Ontology CC-BY CHMO, the chemical methods ontology, describes methods used to Detail
cio Confidence Information Ontology An ontology to capture confidence information about annotations. Detail
cl Cell Ontology CC-BY The Cell Ontology is a structured controlled vocabulary for cell types in animals. Detail
clo Cell Line Ontology CC-BY An ontology to standardize and integrate cell line information and to support computer-assisted reasoning. Detail
cmf CranioMaxilloFacial ontology Detail
cmo Clinical measurement ontology Morphological and physiological measurement records generated from clinical and model organism research and health programs. Detail
cteno Ctenophore Ontology CC-BY An anatomical and developmental ontology for ctenophores (Comb Jellies) Detail
cvdo Cardiovascular Disease Ontology An ontology to describe entities related to cardiovascular diseases Detail
ddanat Dictyostelium discoideum anatomy A structured controlled vocabulary of the anatomy of the slime-mould Dictyostelium discoideum. Detail
ddpheno Dictyostelium discoideum phenotype A structured controlled vocabulary of phenotypes of the slime-mould Dictyostelium discoideum. Detail
dideo Drug Interaction and Evidence Ontology The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology Detail
dinto The Drug-Drug Interactions Ontology CC-BY A formal represention for drug-drug interactions knowledge. Detail
dpo Drosophila Phenotype Ontology CC-BY An ontology of commonly encountered and/or high level Drosophila phenotypes. Detail
dron The Drug Ontology CC-BY An ontology to support comparative effectiveness researchers studying claims data. Detail
duo The Data Use Ontology CC-BY DUO is an ontology which represent data use conditions. Detail
eco Evidence ontology An ontology for experimental and other evidence statements. Detail
ehdaa2 Human developmental anatomy, abstract A structured controlled vocabulary of stage-specific anatomical structures of the developing human. Detail
emap Mouse gross anatomy and development, timed A structured controlled vocabulary of stage-specific anatomical structures of the mouse (Mus). Detail
emapa Mouse gross anatomy and development, timed Abstract (i.e. non-stage specific) stage-specific anatomical structures of the mouse. Detail
envo Environment Ontology CC-BY Ontology of environmental features and habitats Detail
eo Plant Environment Ontology CC-BY 4.0 A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments. Detail
epo Epidemiology Ontology An ontology designed to support the semantic annotation of epidemiology resources Detail
ero eagle-i resource ontology An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens. Detail
exo Exposure ontology Vocabularies for describing exposure data to inform understanding of environmental health. Detail
fao Fungal gross anatomy A structured controlled vocabulary for the anatomy of fungi. Detail
fbbi Biological imaging methods A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research. Detail
fbbt Drosophila gross anatomy CC-BY An ontology representing the gross anatomy of Drosophila melanogaster. Detail
fbcv FlyBase Controlled Vocabulary CC-BY A structured controlled vocabulary used for various aspects of annotation by FlyBase. Detail
fbdv Drosophila development CC-BY A structured controlled vocabulary of the development of Drosophila melanogaster. Detail
fix Physico-chemical methods and properties An ontology of physico-chemical methods and properties. Detail
flopo Flora Phenotype Ontology Traits and phenotypes of flowering plants occurring in digitized Floras Detail
fma Foundational Model of Anatomy (subset) This is currently a slimmed down version of FMA Detail
foodon FOODON CC-BY A broadly scoped ontology representing entities which bear a “food role”. It encompasses materials in natural ecosystems and food webs as well as human-centric categorization and handling of food. Detail
fypo Fission Yeast Phenotype Ontology CC-BY FYPO is a formal ontology of phenotypes observed in fission yeast. Detail
gaz Gazetteer A gazetteer constructed on ontological principles Detail
genepio Genomic Epidemiology Ontology CC-BY The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks. Detail
geno Genotype Ontology CC-BY-SA An integrated ontology for representing the genetic variations described in genotypes, and their causal relationships to phenotype and diseases. Detail
geo Geographical Entity Ontology An ontology of geographical entities Detail
hao Hymenoptera Anatomy Ontology A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, and ants) Detail
hom Homology Ontology CC-BY This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology. Detail
hp human phenotype ontology A structured and controlled vocabulary for the phenotypic features encountered in human hereditary and other disease. Detail
hsapdv Human Developmental Stages CC-BY Life cycle stages for Human Detail
iao Information Artifact Ontology CC-BY An ontology of information entities. Detail
ico Informed Consent Ontology CC-BY An ontology of clinical informed consents Detail
ido Infectious disease Detail
idomal Malaria Ontology An application ontology to cover all aspects of malaria as well as the intervention attempts to control it. Detail
kisao Kinetic Simulation Algorithm Ontology Artistic License 2.0 A classification of algorithms available for the simulation of models in biology. Detail
ma Mouse adult gross anatomy A structured controlled vocabulary of the adult anatomy of the mouse (Mus). Detail
mamo Mathematical modeling ontology Artistic License 2.0 The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features. Detail
mf Mental Functioning Ontology Detail
mfmo Mammalian Feeding Muscle Ontology CC-BY The Mammalian Feeding Muscle Ontology is an antomy ontology for the muscles of the head and neck that participate in feeding, swallowing, and other oral-pharyngeal behaviors. Detail
mfoem Emotion Ontology An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings. Detail
mfomd MFO Mental Disease Ontology An ontology to describe and classify mental diseases Detail
mi Molecular interactions A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. Detail
miapa MIAPA Ontology An application ontology to formalize annotation of phylogenetic data. Detail
micro prokaryotic phenotypic and metabolic characters CC-BY An ontology of prokaryotic phenotypic and metabolic characters Detail
mirnao microRNA Ontology An application ontology for use with miRNA databases. Detail
miro Mosquito insecticide resistance Application ontology for entities related to insecticide resistance in mosquitos Detail
mmo Measurement method ontology A representation of the variety of methods used to make clinical and phenotype measurements. Detail
mmusdv Mouse Developmental Stages CC-BY Life cycle stages for Mus Musculus Detail
mod Protein modification PSI-MOD is an ontology consisting of terms that describe protein chemical modifications Detail
mondo Monarch Disease Ontology CC-BY a semi-automatically constructed ontology that merges in multiple disease resources to yield a coherent merged ontology Detail
mop Molecular Process Ontology Processes at the molecular level Detail
mp Mammalian phenotype Standard terms for annotating mammalian phenotypic data. Detail
mpath Mouse pathology CC-BY A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes Detail
mro MHC Restriction Ontology CC-BY An ontology for Major Histocompatibility Complex (MHC) restriction in experiments Detail
ms Mass spectrometry ontology CC-BY A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry. Detail
nbo Neuro Behavior Ontology CC-BY Detail
ncbitaxon NCBI organismal classification An ontology representation of the NCBI organismal taxonomy Detail
ncit NCI Thesaurus an ontology-like vocabulary that includes broad coverage of the cancer domain, including cancer related diseases, findings and abnormalities Detail
ncro Non-Coding RNA Ontology CC-BY An ontology for non-coding RNA, both of biological origin, and engineered. Detail
oae Ontology of Adverse Events CC-BY A biomedical ontology in the domain of adverse events Detail
oarcs Ontology of Arthropod Circulatory Systems CC-BY OArCS is an ontology describing the Arthropod ciruclatory system. Detail
oba Ontology of Biological Attributes A collection of biological attributes (traits) covering all kingdoms of life. Detail
obcs Ontology of Biological and Clinical Statistics CC-BY A biomedical ontology in the domain of biological and clinical statistics. Detail
obib Ontology for Biobanking CC-BY An ontology built for annotation and modeling of biobank repository and biobanking administration Detail
ogg The Ontology of Genes and Genomes CC-BY A formal ontology of genes and genomes of biological organisms. Detail
ogi Ontology for genetic interval An ontology that formalizes the genomic element by defining an upper class genetic interval Detail
ogms Ontology for General Medical Science An ontology for representing treatment of disease and diagnosis and on carcinomas and other pathological entities Detail
ogsf Ontology of Genetic Susceptibility Factor An application ontology to represent genetic susceptibility to a specific disease, adverse event, or a pathological process. Detail
ohd The Oral Health and Disease Ontology CC-BY The Oral Health and Disease Ontology was created, initially, to represent the content of dental practice health records. Detail
ohmi Ontology of Host-Microbiome Interactions CC-BY The Ontology of Host-Microbiome Interactions aims to ontologically represent and standardize various entities and relations related to microbiomes, microbiome host organisms (e.g., human and mouse), and the interactions between the hosts and microbiomes at different conditions. Detail
olatdv Medaka Developmental Stages CC-BY Life cycle stages for Medaka Detail
omiabis Ontologized MIABIS CC-BY An ontological version of MIABIS (Minimum Information About BIobank data Sharing) Detail
omit Ontology for MIRNA Target Detail
omp Ontology of Microbial Phenotypes CC-BY An ontology of phenotypes covering microbes Detail
omrse Ontology of Medically Related Social Entities This ontology covers the domain of social entities that are related to health care, such as demographic information and the roles of various individuals and organizations. Detail
ontoneo Obstetric and Neonatal Ontology CC-BY The Obstetric and Neonatal Ontology is a structured controlled vocabulary to provide a representation of the data from electronic health records (EHRs) involved in the care of the pregnant woman, and of her baby. Detail
oostt Ontology of Organizational Structures of Trauma centers and Trauma systems CC-BY An ontology built for representating the organizational components of trauma centers and trauma systems. Detail
opl Ontology for Parasite LifeCycle A reference ontology for parasite life cycle stages. Detail
ovae Ontology of Vaccine Adverse Events CC-BY A biomedical ontology in the domain of vaccine adverse events. Detail
pco Population and Community Ontology A taxon-neutral ontology of material entities, qualities, and processes related to collections of interacting organisms such as populations and communities. Detail
pdro The Prescription of Drugs Ontology An ontology to describe entities related to prescription of drugs Detail
pdumdv Platynereis Developmental Stages CC-BY Life cycle stages for Platynereis dumerilii Detail
plana planaria-ontology CC-BY planaria-ontology is an ontology for planarian anatomy and developmental stages of S.med Detail
poro Porifera Ontology CC-BY An ontology covering the anatomy of the taxon Porifera (sponges) Detail
ppo Plant Phenology Ontology CC-BY An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data across sources and scales. Detail
pw Pathway ontology A controlled vocabulary for annotating gene products to pathways. Detail
rex Physico-chemical process An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time. Detail
rnao RNA ontology Detail
ro Relations Ontology CC-BY Relationship types shared across multiple ontologies Detail
rs Rat Strain Ontology Ontology of rat strains Detail
rxno Name Reaction Ontology Connects organic name reactions to their roles in an organic synthesis and to processes in MOP Detail
sbo Systems Biology Artistic License 2.0 Terms commonly used in Systems Biology, and in particular in computational modeling. Detail
sep Sample processing and separation techniques A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments. Detail
sepio Scientific Evidence and Provenance Information Ontology CC-BY-SA An ontology for representing the provenance of scientific claims and the evidence that supports them. Detail
sibo Social Insect Behavior Ontology CC-BY Social Behavior in insects Detail
so Sequence types and features A structured controlled vocabulary for sequence annotation, for the exchange of annotation data and for the description of sequence objects in databases. Detail
spd Spider Ontology An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow). Detail
stato The Statistical Methods Ontology CC-BY STATO is a general-purpose STATistics Ontology. Its aim is to provide coverage for processes such as statistical tests, their conditions of application, and information needed or resulting from statistical methods, such as probability distributions, variables, spread and variation metrics. STATO also covers aspects of experimental design and description of plots and graphical representations commonly used to provide visual cues of data distribution or layout and to assist review of the results. Detail
swo Software ontology Detail
symp Symptom Ontology CC-BY An ontology of disease symptoms, with symptoms encompasing perceived changes in function, sensations or appearance reported by a patient indicative of a disease. Detail
tads Tick gross anatomy The anatomy of the Tick, Families: Ixodidae, Argassidae Detail
taxrank Taxonomic rank vocabulary CC-0 A vocabulary of taxonomic ranks (species, family, phylum, etc) Detail
tgma Mosquito gross anatomy A structured controlled vocabulary of the anatomy of mosquitoes. Detail
to Plant Trait Ontology CC-BY 4.0 A controlled vocabulary of describe phenotypic traits in plants. Detail
trans Pathogen Transmission Ontology CC-BY An ontology representing the disease transmission process during which the pathogen is transmitted directly or indirectly from its natural reservoir, a susceptible host or source to a new host. Detail
tto Teleost taxonomy CC-0 An ontology covering the taxonomy of teleosts (bony fish) Detail
uberon Uberon multi-species anatomy ontology CC-BY An integrated cross-species anatomy ontology covering animals and bridging multiple species-specific ontologies Detail
uo Units of measurement CC-BY Metrical units for use in conjunction with PATO Detail
upheno Combined phenotype ontology Detail
vario Variation Ontology Variation Ontology, VariO, is an ontology for standardized, systematic description of effects, consequences and mechanisms of variations. Detail
vo Vaccine Ontology CC-BY a biomedical ontology in the domain of vaccine and vaccination Detail
vt Vertebrate trait An ontology of traits covering vertebrates Detail
vto Vertebrate Taxonomy Ontology CC-0 Comprehensive hierarchy of extinct and extant vertebrate taxa. Detail
wbbt C. elegans gross anatomy A structured controlled vocabulary of the anatomy of Caenorhabditis elegans. Detail
wbls C. elegans development A structured controlled vocabulary of the development of Caenorhabditis elegans. Detail
wbphenotype C. elegans phenotype A structured controlled vocabulary of Caenorhabditis elegans phenotypes Detail
xco Experimental condition ontology Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms. Detail
xl Cross-linker reagents ontology CC-BY A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry. Detail
zeco Zebrafish Experimental Conditions Ontology CC-BY Experimental conditions applied to zebrafish, developed to facilitate experiment condition annotation at ZFIN Detail
zfs Zebrafish developmental stages CC-BY Developmental stages of the Zebrafish Detail
aao Amphibian gross anatomy obsolete Detail
adw Animal natural history and life history obsolete Detail
ato Amphibian taxonomy obsolete Detail
bila Bilateria anatomy obsolete Detail
bootstrep Gene Regulation Ontology obsolete Detail
dc_cl Dendritic cell obsolete Detail
ehda Human developmental anatomy, timed version obsolete Detail
ehdaa Human developmental anatomy, abstract version obsolete Detail
ev eVOC (Expressed Sequence Annotation for Humans) obsolete Detail
fbsp Fly taxonomy The taxonomy of the family Drosophilidae (largely after Baechli) and of other taxa referred to in FlyBase. obsolete Detail
flu Influenza Ontology obsolete Detail
gro Cereal Plant Gross Anatomy obsolete Detail
habronattus Habronattus courtship obsolete Detail
iev Event (INOH pathway ontology) obsolete Detail
imr Molecule role (INOH Protein name/family name ontology) obsolete Detail
ipr Protein Domains obsolete Detail
lipro Lipid Ontology An ontology representation of the LIPIDMAPS nomenclature classification. obsolete Detail
loggerhead Loggerhead nesting obsolete Detail
mao Multiple alignment obsolete Detail
mat Minimal anatomical terminology obsolete Detail
mfo Medaka fish anatomy and development A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, Oryzias latipes. obsolete Detail
mo Microarray experimental conditions A standardized description of a microarray experiment in support of MAGE v.1. obsolete Detail
nif_cell NIF Cell Neuronal cell types obsolete Detail
nif_dysfunction NIF Dysfunction obsolete Detail
nif_grossanatomy NIF Gross Anatomy obsolete Detail
nmr NMR-instrument specific component of metabolomics investigations Descriptors relevant to the experimental conditions of the Nuclear Magnetic Resonance (NMR) component in a metabolomics investigation. obsolete Detail
obo_rel OBO relationship types (legacy) obsolete Detail
pao Plant Anatomy Ontology obsolete Detail
pd_st Platynereis stage ontology obsolete Detail
pgdso Plant Growth and Development Stage obsolete Detail
plo Plasmodium life cycle obsolete Detail
propreo Proteomics data and process provenance obsolete Detail
resid Protein covalent bond For the description of covalent bonds in proteins. obsolete Detail
sao Subcellular anatomy ontology obsolete Detail
sopharm Suggested Ontology for Pharmacogenomics obsolete Detail
tahe Terminology of Anatomy of Human Embryology obsolete Detail
tahh Terminology of Anatomy of Human Histology obsolete Detail
tao Teleost Anatomy Ontology CC-0 Multispecies fish anatomy ontology. Originally seeded from ZFA, but intended to cover terms relevant to other taxa obsolete Detail
vhog Vertebrate Homologous Ontology Group Ontology obsolete Detail
vsao Vertebrate Skeletal Anatomy Ontology- Vertebrate skeletal anatomy ontology. obsolete Detail
ypo Yeast phenotypes obsolete Detail
zea Maize gross anatomy obsolete Detail