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This article [doi:10.1038/ismej.2007.3] has been cited in the following papers, taken from those publishers and societies that are participating in CrossRef's Cited-by Linking service. The number of citations from this service is usually lower than citation numbers from databases that include more journals.

1. EISSN: 1432-184X ISSN: 0095-3628

   Microbial Ecology

   Pyrosequencing Analysis of the Salivary Microbiota of Healthy Chinese Children and Adults

   Zongxin Ling, Xia Liu, Yuezhu Wang, Lanjuan Li, Charlie Xiang

   65 (2), 2013, p.487

   doi:10.1007/s00248-012-0123-x

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   PLoS Pathogens

   Targeted Restoration of the Intestinal Microbiota with a Simple, Defined Bacteriotherapy Resolves Relapsing Clostridium difficile Disease in Mice

   Trevor D. Lawley et al.

   8 (10), 2012, p.e1002995

   doi:10.1371/journal.ppat.1002995

3. EISSN: 2235-2988

   Frontiers in Cellular and Infection Microbiology

   Reciprocal Interactions between Nematodes and Their Microbial Environments

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   doi:10.3389/fcimb.2017.00144

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   The ISME Journal

   The chemical interactome space between the human host and the genetically defined gut metabotypes

   Ulrik Plesner Jacobsen et al.

   7 (4), 2013, p.730

   doi:10.1038/ismej.2012.141

5. ISSN: 19315244

   Translational Research

   The human gut microbiome: current knowledge, challenges, and future directions

   Maneesh Dave, Peter D. Higgins, Sumit Middha, Kevin P. Rioux

   160 (4), 2012, p.246

   doi:10.1016/j.trsl.2012.05.003

6. EISSN: 1475-2662 ISSN: 0007-1145

   British Journal of Nutrition

   Intestinal microbiota, diet and health

   Susan E. Power, Paul W. O'Toole, Catherine Stanton, R. Paul Ross, Gerald F. Fitzgerald

   111 (03), 2014, p.387

   doi:10.1017/S0007114513002560

7. ISSN: 09523871

   Journal of Human Nutrition and Dietetics

   The human gut microbiota and its interactive connections to diet

   C. Milani et al.

   29 (5), 2016, p.539

   doi:10.1111/jhn.12371

8. EISSN: 1574-6941

   FEMS Microbiology Ecology

   Impact of cystic fibrosis disease on archaea and bacteria composition of gut microbiota

   Francesco Miragoli et al.

   93 (2), 2017, p.fiw230

   doi:10.1093/femsec/fiw230

9. ISSN: 00028614

   Journal of the American Geriatrics Society

   Geriatric Infectious Diseases: Current Concepts on Diagnosis and Management

   Thomas T. Yoshikawa, Dean C. Norman

   65 (3), 2017, p.631

   doi:10.1111/jgs.14731

10. EISSN: 2073-4425

    Genes

    Ecology and Evolution of the Human Microbiota: Fire, Farming and Antibiotics

    Michael Gillings, Ian Paulsen, Sasha Tetu

    6 (3), 2015, p.841

    doi:10.3390/genes6030841

11. ISSN: 1542975X

    Birth Defects Research Part C: Embryo Today: Reviews

    Development of the infant intestinal microbiome: A bird's eye view of a complex process

    Sharon B. Meropol, Amy Edwards

    105 (4), 2015, p.228

    doi:10.1002/bdrc.21114

12. ISSN: 03750906

    Revista de Gastroenterología de México

    Perspectivas históricas y vigentes sobre la infección por Clostridium difficile

    D.A. Álvarez-Hernández et al.

    doi:10.1016/j.rgmx.2017.03.004

13. EISSN: 1475-2662 ISSN: 0007-1145

    British Journal of Nutrition

    The effect of a multispecies probiotic on the composition of the faecal microbiota and bowel habits in chronic obstructive pulmonary disease patients treated with antibiotics

    Catherina J. M. Koning et al.

    103 (10), 2010, p.1452

    doi:10.1017/S0007114509993497

14. EISSN: 1468-3288 ISSN: 0017-5749

    Gut

    Gut microbiota disturbance during antibiotic therapy: a multi-omic approach

    Ana Elena Pérez-Cobas et al.

    62 (11), 2013, p.1591

    doi:10.1136/gutjnl-2012-303184

15. ISSN: 09248579

    International Journal of Antimicrobial Agents

    Effects of oral antibiotics and isotretinoin on the murine gut microbiota

    Eugenia Becker et al.

    doi:10.1016/j.ijantimicag.2017.03.017

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    Pathogens

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    Anuradha Ravi, Ekaterina Avershina, Jane Ludvigsen, Trine L'Abée-Lund, Knut Rudi

    3 (2), 2014, p.238

    doi:10.3390/pathogens3020238

17. ISSN: 00928674

    Cell

    The Impact of the Gut Microbiota on Human Health: An Integrative View

    Jose C. Clemente, Luke K. Ursell, Laura Wegener Parfrey, Rob Knight

    148 (6), 2012, p.1258

    doi:10.1016/j.cell.2012.01.035

18. EISSN: 1932-6203

    PLoS ONE

    Short-Term Effect of Antibiotics on Human Gut Microbiota

    Suchita Panda et al.

    9 (4), 2014, p.e95476

    doi:10.1371/journal.pone.0095476

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    International Journal of Molecular Sciences

    Impact of Microbes on the Pathogenesis of Primary Biliary Cirrhosis (PBC) and Primary Sclerosing Cholangitis (PSC)

    Jochen Mattner

    17 (11), 2016, p.1864

    doi:10.3390/ijms17111864

20. EISSN: 1756-1663 ISSN: 1340-2838

    DNA Research

    Robustness of Gut Microbiota of Healthy Adults in Response to Probiotic Intervention Revealed by High-Throughput Pyrosequencing

    S.-W. Kim et al.

    20 (3), 2013, p.241

    doi:10.1093/dnares/dst006

21. ISSN: 14714906

    Trends in Immunology

    Antibiotics, microbiota, and immune defense

    Carles Ubeda, Eric G. Pamer

    33 (9), 2012, p.459

    doi:10.1016/j.it.2012.05.003

22. EISSN: 1476-5543 ISSN: 0743-8346

    Journal of Perinatology

    The developing intestinal microbiome and its relationship to health and disease in the neonate

    R Murgas Torrazza, J Neu

    p.S29

    doi:10.1038/jp.2010.172

23. EISSN: 2005-1212 ISSN: 1976-2283

    Gut and Liver

    Gut Microbiota as Potential Orchestrators of Irritable Bowel Syndrome

    Sean M.P. Bennet, Lena Ohman, Magnus Simren

    9 (3), 2015.

    doi:10.5009/gnl14344

24. EISSN: 13652982 ISSN: 13501925

    Neurogastroenterology & Motility

    Probiotics effects on gastrointestinal function: beyond the gut?

    e. f. verdu

    21 (5), 2009, p.477

    doi:10.1111/j.1365-2982.2009.01297.x

25. EISSN: 1651-1980 ISSN: 0036-5548

    Scandinavian Journal of Infectious Diseases

    Prolonged impact of a one-week course of clindamycin on Enterococcus spp. in human normal microbiota

    Marianne Lindgren, Sonja Löfmark, Charlotta Edlund, Pentti Huovinen, Jari Jalava

    41 (3), 2009, p.215

    doi:10.1080/00365540802651897

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    PLoS ONE

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    Alexandra Wittmann, Ingo B. Autenrieth, Julia-Stefanie Frick, Markus M. Heimesaat

    8 (8), 2013, p.e71338

    doi:10.1371/journal.pone.0071338

27. ISSN: 00296643

    Nutrition Reviews

    Defining the human microbiome

    Luke K Ursell, Jessica L Metcalf, Laura Wegener Parfrey, Rob Knight

    p.S38

    doi:10.1111/j.1753-4887.2012.00493.x

28. EISSN: 2162-402X

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    Bertrand Routy et al.

    6 (1), 2017, p.e1258506

    doi:10.1080/2162402X.2016.1258506

29. EISSN: 1476-5543 ISSN: 0743-8346

    Journal of Perinatology

    Oral colostrum priming shortens hospitalization without changing the immunomicrobial milieu

    J Romano-Keeler et al.

    37 (1), 2017, p.36

    doi:10.1038/jp.2016.161

30. EISSN: 1465-6906

    Genome Biology

    Temporal and technical variability of human gut metagenomes

    Anita Y Voigt et al.

    16 (1), 2015.

    doi:10.1186/s13059-015-0639-8

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    PLOS Pathogens

    Risks of Antibiotic Exposures Early in Life on the Developing Microbiome

    Anjelique Schulfer, Martin J. Blaser, Virginia L. Miller

    11 (7), 2015, p.e1004903

    doi:10.1371/journal.ppat.1004903

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    Inflammatory Bowel Diseases

    Analysis and Interpretation of the Human Microbiome

    James J. Ashton, R. Mark Beattie, Sarah Ennis, David W. Cleary

    22 (7), 2016, p.1713

    doi:10.1097/MIB.0000000000000809

33. EISSN: 1525-3171 ISSN: 0032-5791

    Poultry Science

    Long-term effects of early life microbiota disturbance on adaptive immunity in laying hens

    K. Simon et al.

    95 (7), 2016, p.1543

    doi:10.3382/ps/pew088

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    doi:10.5507/bp.2016.039

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    Trends in Microbiology

    Functional and phylogenetic assembly of microbial communities in the human microbiome

    Afrah Shafquat, Regina Joice, Sheri L. Simmons, Curtis Huttenhower

    22 (5), 2014, p.261

    doi:10.1016/j.tim.2014.01.011

36. EISSN: 2045-2322

    Scientific Reports

    DNA microarray analysis reveals that antibiotic resistance-gene diversity in human gut microbiota is age related

    Na Lu et al.

    4 (1), 2015.

    doi:10.1038/srep04302

37. EISSN: 2079-6382

    Antibiotics

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    Caroline Vincent, Amee Manges

    4 (3), 2015, p.230

    doi:10.3390/antibiotics4030230

38. EISSN: 1932-6203

    PLOS ONE

    Different Dynamic Patterns of β-Lactams, Quinolones, Glycopeptides and Macrolides on Mouse Gut Microbial Diversity

    Jia Yin et al.

    10 (5), 2015, p.e0126712

    doi:10.1371/journal.pone.0126712

39. EISSN: 1530-0447 ISSN: 0031-3998

    Pediatric Research

    Gut Microbiota of the Very Low Birth Weight Infant

    Sharon Unger, Alain Stintzi, Prakeshkumar Shah, David Mack, Deborah L O’Connor

    doi:10.1038/pr.2014.162

40. ISSN: 01677012

    Journal of Microbiological Methods

    Simulating distal gut mucosal and luminal communities using packed-column biofilm reactors and an in vitro chemostat model

    Julie A.K. McDonald et al.

    p.36

    doi:10.1016/j.mimet.2014.11.007

41. EISSN: 1936-086X ISSN: 1936-0851

    ACS Nano

    Tools for the Microbiome: Nano and Beyond

    Julie S. Biteen et al.

    10 (1), 2016, p.6

    doi:10.1021/acsnano.5b07826

42. EISSN: 14622920 ISSN: 14622912

    Environmental Microbiology

    Applications of the rep-PCR DNA fingerprinting technique to study microbial diversity, ecology and evolution

    Satoshi Ishii, Michael J. Sadowsky

    11 (4), 2009, p.733

    doi:10.1111/j.1462-2920.2008.01856.x

43. ISSN: 00113840

    Current Problems in Surgery

    The intestinal microbiome and surgical disease

    Monika A. Krezalek et al.

    53 (6), 2016, p.257

    doi:10.1067/j.cpsurg.2016.06.001

44. ISSN: 03998320

    Gastroentérologie Clinique et Biologique

    Le microbiote dans les diarrhées infectieuses

    C.-M. Surawicz

    34 (4), 2010, p.31

    doi:10.1016/S0399-8320(10)70005-1

45. EISSN: 1876-2891 ISSN: 1876-2883

    Beneficial Microbes

    Alteration of the intestinal microbiota as a cause of and a potential therapeutic option in irritable bowel syndrome

    J. König, R.J. Brummer

    5 (3), 2014, p.247

    doi:10.3920/BM2013.0033

46. EISSN: 2092-6413

    Experimental & Molecular Medicine

    The interplay between host immune cells and gut microbiota in chronic inflammatory diseases

    Donghyun Kim, Melody Y Zeng, Gabriel Núñez

    49 (5), 2017, p.e339

    doi:10.1038/emm.2017.24

47. ISSN: 13695274

    Current Opinion in Microbiology

    Antibiotics and the developing infant gut microbiota and resistome

    Molly K Gibson, Terence S Crofts, Gautam Dantas

    p.51

    doi:10.1016/j.mib.2015.07.007

48. EISSN: 1932-6203

    PLoS ONE

    The Microbiome of the Middle Meatus in Healthy Adults

    Vijay R. Ramakrishnan et al.

    8 (12), 2013, p.e85507

    doi:10.1371/journal.pone.0085507

49. EISSN: 1572-0241 ISSN: 0002-9270

    The American Journal of Gastroenterology

    Association Between the Use of Antibiotics and New Diagnoses of Crohn's Disease and Ulcerative Colitis

    Souradet Y Shaw, James F Blanchard, Charles N Bernstein

    106 (12), 2011, p.2133

    doi:10.1038/ajg.2011.304

50. ISSN: 14714922

    Trends in Parasitology

    Wolbachia: Can we save lives with a great pandemic?

    Daniel LePage, Seth R. Bordenstein

    29 (8), 2013, p.385

    doi:10.1016/j.pt.2013.06.003

51. ISSN: 16134125

    Molecular Nutrition & Food Research

    Use of antibiotics is associated with lower enterolactone plasma concentration

    Anne K. Bolvig et al.

    60 (12), 2016, p.2712

    doi:10.1002/mnfr.201600566

52. EISSN: 1664-302X

    Frontiers in Microbiology

    Antibiotics and the Human Gut Microbiome: Dysbioses and Accumulation of Resistances

    M. P. Francino

    doi:10.3389/fmicb.2015.01543

53. EISSN: 1468-3288 ISSN: 0017-5749

    Gut

    Uncovering effects of antibiotics on the host and microbiota using transkingdom gene networks

    Andrey Morgun et al.

    64 (11), 2015, p.1732

    doi:10.1136/gutjnl-2014-308820

54. EISSN: 1476-5497 ISSN: 0307-0565

    International Journal of Obesity

    Antibiotic use and childhood body mass index trajectory

    B S Schwartz et al.

    40 (4), 2016, p.615

    doi:10.1038/ijo.2015.218

55. ISSN: 02752565

    American Journal of Primatology

    Destabilization of the gut microbiome marks the end-stage of simian immunodeficiency virus infection in wild chimpanzees

    Hannah J. Barbian et al.

    p.n/a

    doi:10.1002/ajp.22515

56. ISSN: 13695274

    Current Opinion in Microbiology

    Inflammatory disease caused by intestinal pathobionts

    Ellen L Zechner

    p.64

    doi:10.1016/j.mib.2017.01.011

57. EISSN: 1422-0067

    International Journal of Molecular Sciences

    Modulation of Gut Microbiota in the Management of Metabolic Disorders: The Prospects and Challenges

    Omotayo Erejuwa, Siti Sulaiman, Mohd Wahab

    15 (3), 2014, p.4158

    doi:10.3390/ijms15034158

58. ISSN: 0021-9738

    Journal of Clinical Investigation

    Antibiotics and the gut microbiota

    Sheetal R. Modi, James J. Collins, David A. Relman

    124 (10), 2014, p.4212

    doi:10.1172/JCI72333

59. ISSN: 13695274

    Current Opinion in Microbiology

    Antibiotics and the resistant microbiome

    Morten OA Sommer, Gautam Dantas

    14 (5), 2011, p.556

    doi:10.1016/j.mib.2011.07.005

60. ISSN: 08840431

    Journal of Bone and Mineral Research

    The Microbiome and Musculoskeletal Conditions of Aging: A Review of Evidence for Impact and Potential Therapeutics

    Claire J Steves, Sarah Bird, Frances MK Williams, Tim D Spector

    31 (2), 2016, p.261

    doi:10.1002/jbmr.2765

61. ISSN: 10759964

    Anaerobe

    The effect of penicillin administration in early life on murine gut microbiota and blood lymphocyte subsets

    Jaroslaw Daniluk et al.

    p.18

    doi:10.1016/j.anaerobe.2017.03.015

62. ISSN: 1363-1950

    Current Opinion in Clinical Nutrition and Metabolic Care

    Gut microbiota composition and its effects on obesity and insulin resistance

    Andrea M. Caricilli, Mario J.A. Saad

    17 (4), 2014, p.312

    doi:10.1097/MCO.0000000000000067

63. EISSN: 1475-2662 ISSN: 0007-1145

    British Journal of Nutrition

    Exploring the effects of galacto-oligosaccharides on the gut microbiota of healthy adults receiving amoxicillin treatment

    S. E. Ladirat et al.

    112 (04), 2014, p.536

    doi:10.1017/S0007114514001135

64. EISSN: 1460-2091 ISSN: 0305-7453

    Journal of Antimicrobial Chemotherapy

    Alterations in intestinal microbiota of elderly Irish subjects post-antibiotic therapy

    O. O'Sullivan et al.

    68 (1), 2013, p.214

    doi:10.1093/jac/dks348

65. ISSN: 00062952

    Biochemical Pharmacology

    Antibiotic use and microbiome function

    Manuel Ferrer, Celia Méndez-García, David Rojo, Coral Barbas, Andrés Moya

    p.114

    doi:10.1016/j.bcp.2016.09.007

66. ISSN: 00928674

    Cell

    Specificity of Polysaccharide Use in Intestinal Bacteroides Species Determines Diet-Induced Microbiota Alterations

    Erica D. Sonnenburg et al.

    141 (7), 2010, p.1241

    doi:10.1016/j.cell.2010.05.005

67. EISSN: 2079-9284

    Cosmetics

    Meta Analysis of Skin Microbiome: New Link between Skin Microbiota Diversity and Skin Health with Proposal to Use This as a Future Mechanism to Determine Whether Cosmetic Products Damage the Skin

    Christopher Wallen-Russell, Sam Wallen-Russell

    4 (2), 2017, p.14

    doi:10.3390/cosmetics4020014

68. EISSN: 2041-1723

    Nature Communications

    Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children

    Katri Korpela et al.

    p.10410

    doi:10.1038/ncomms10410

69. EISSN: 1744-8409 ISSN: 1744-666X

    Expert Review of Clinical Immunology

    A case for antibiotic perturbation of the microbiota leading to allergy development

    Lisa A Reynolds, B Brett Finlay

    9 (11), 2013, p.1019

    doi:10.1586/1744666X.2013.851603

70. ISSN: 03069877

    Medical Hypotheses

    Obsessive–compulsive disorder and gut microbiota dysregulation

    Jon C. Rees

    82 (2), 2014, p.163

    doi:10.1016/j.mehy.2013.11.026

71. ISSN: 12864579

    Microbes and Infection

    Control of host inflammatory responsiveness by indigenous microbiota reveals an adaptive component of the innate immune system

    Caio T. Fagundes, Danielle G. Souza, Jacques R. Nicoli, Mauro M. Teixeira

    13 (14-15), 2011, p.1121

    doi:10.1016/j.micinf.2011.07.012

72. EISSN: 1949-0984 ISSN: 1949-0976

    Gut Microbes

    Impact of probiotic supplements on microbiome diversity following antibiotic treatment of mice

    Hannah Grazul, L. Leann Kanda, David Gondek

    7 (2), 2016, p.101

    doi:10.1080/19490976.2016.1138197

73. ISSN: 13645072

    Journal of Applied Microbiology

    SYN-004 (ribaxamase), an oral beta-lactamase, mitigates antibiotic-mediated dysbiosis in a porcine gut microbiome model

    S. Connelly et al.

    123 (1), 2017, p.66

    doi:10.1111/jam.13432

74. ISSN: 00029378

    American Journal of Obstetrics and Gynecology

    Cesarean section and development of the immune system in the offspring

    Clara E. Cho, Mikael Norman

    208 (4), 2013, p.249

    doi:10.1016/j.ajog.2012.08.009

75. ISSN: 14628902

    Diabetes, Obesity and Metabolism

    The therapeutic potential of manipulating gut microbiota in obesity and type 2 diabetes mellitus

    R. S. Kootte et al.

    14 (2), 2012, p.112

    doi:10.1111/j.1463-1326.2011.01483.x

76. EISSN: 1437-7799 ISSN: 1342-1751

    Clinical and Experimental Nephrology

    The role of the gastrointestinal tract and microbiota on uremic toxins and chronic kidney disease development

    David Briskey, Patrick Tucker, David W. Johnson, Jeff S. Coombes

    21 (1), 2017, p.7

    doi:10.1007/s10157-016-1255-y

77. EISSN: 1751-7370 ISSN: 1751-7362

    The ISME Journal

    Molecular analysis of the gut microbiota of identical twins with Crohn's disease

    Johan Dicksved et al.

    2 (7), 2008, p.716

    doi:10.1038/ismej.2008.37

78. ISSN: 03781135

    Veterinary Microbiology

    Fecal microbiota of calves in the clinical setting: Effect of penicillin treatment

    Anne-Mette R. Grønvold et al.

    153 (3-4), 2011, p.354

    doi:10.1016/j.vetmic.2011.05.040

79. EISSN: 1932-6203

    PLoS ONE

    Impact of Colonoscopy Bowel Preparation on Intestinal Microbiota

    Claire L. O’Brien, Gwen E. Allison, Florian Grimpen, Paul Pavli, Josh Neufeld

    8 (5), 2013, p.e62815

    doi:10.1371/journal.pone.0062815

80. EISSN: 1474-1741 ISSN: 1474-1733

    Nature Reviews Immunology

    Host–microorganism interactions in lung diseases

    Benjamin J. Marsland, Eva S. Gollwitzer

    14 (12), 2014, p.827

    doi:10.1038/nri3769

81. ISSN: 10445323

    Seminars in Immunology

    Environmental influences on T regulatory cells in inflammatory bowel disease

    Gijs Hardenberg, Theodore S. Steiner, Megan K. Levings

    23 (2), 2011, p.130

    doi:10.1016/j.smim.2011.01.012

82. EISSN: 1480-3275 ISSN: 0008-4166

    Canadian Journal of Microbiology

    Microbiote et probiotiques : impact en santé humaine

    Sophie Coudeyras, Christiane Forestier

    56 (8), 2010, p.611

    doi:10.1139/W10-052

83. EISSN: 1664-302X

    Frontiers in Microbiology

    Impact of the gut microbiota on the development of obesity and type 2 diabetes mellitus

    Isabel Moreno-Indias, Fernando Cardona, Francisco J. Tinahones, María Isabel Queipo-Ortuño

    doi:10.3389/fmicb.2014.00190

84. EISSN: 1432-184X ISSN: 0095-3628

    Microbial Ecology

    Effect of Antibiotic Treatment on the Gastrointestinal Microbiome of Free-Ranging Western Lowland Gorillas (Gorilla g. gorilla)

    Klára Vlčková et al.

    72 (4), 2016, p.943

    doi:10.1007/s00248-016-0745-5

85. EISSN: 1475-2719 ISSN: 0029-6651

    Proceedings of the Nutrition Society

    Gut microbiota in older subjects: variation, health consequences and dietary intervention prospects

    Eibhlís M. O'Connor, Eileen A. O'Herlihy, Paul W. O'Toole

    73 (04), 2014, p.441

    doi:10.1017/S0029665114000597

86. EISSN: 1476-6256 ISSN: 0002-9262

    American Journal of Epidemiology

    Association of Repeated Exposure to Antibiotics With the Development of Pediatric Crohn's Disease--A Nationwide, Register-based Finnish Case-Control Study

    L. Virta, A. Auvinen, H. Helenius, P. Huovinen, K.-L. Kolho

    175 (8), 2012, p.775

    doi:10.1093/aje/kwr400

87. EISSN: 1474-1784 ISSN: 1474-1776

    Nature Reviews Drug Discovery

    Gut microbiota: a potential new territory for drug targeting

    Wei Jia, Houkai Li, Liping Zhao, Jeremy K. Nicholson

    7 (2), 2008, p.123

    doi:10.1038/nrd2505

88. EISSN: 1949-0984 ISSN: 1949-0976

    Gut Microbes

    Comparing the microbiota of the cystic fibrosis lung and human gut

    Geraint B. Rogers et al.

    1 (2), 2010, p.85

    doi:10.4161/gmic.1.2.11350

89. EISSN: 1740-1534 ISSN: 1740-1526

    Nature Reviews Microbiology

    Shifting the balance: antibiotic effects on host–microbiota mutualism

    Benjamin P. Willing, Shannon L. Russell, B. Brett Finlay

    9 (4), 2011, p.233

    doi:10.1038/nrmicro2536

90. ISSN: 00296643

    Nutrition Reviews

    The human microbiome: ecosystem resilience and health

    David A Relman

    p.S2

    doi:10.1111/j.1753-4887.2012.00489.x

91. EISSN: 1095-9203 ISSN: 0036-8075

    Science

    The Application of Ecological Theory Toward an Understanding of the Human Microbiome

    E. K. Costello, K. Stagaman, L. Dethlefsen, B. J. M. Bohannan, D. A. Relman

    336 (6086), 2012, p.1255

    doi:10.1126/science.1224203

92. EISSN: 1932-6203

    PLOS ONE

    The Effect of Probiotic Treatment on Patients Infected with the H7N9 Influenza Virus

    Xinjun Hu et al.

    11 (3), 2016, p.e0151976

    doi:10.1371/journal.pone.0151976

93. EISSN: 1664-302X

    Frontiers in Microbiology

    Dynamics of the surgical microbiota along the cardiothoracic surgery pathway

    Sara Romano-Bertrand et al.

    doi:10.3389/fmicb.2014.00787

94. EISSN: 1932-6203

    PLOS ONE

    Effect of Antibiotics on Gut Microbiota, Gut Hormones and Glucose Metabolism

    Kristian H. Mikkelsen et al.

    10 (11), 2015, p.e0142352

    doi:10.1371/journal.pone.0142352

95. ISSN: 13237799

    Respirology

    Microbiomes in respiratory health and disease: An Asia-Pacific perspective

    Sanjay H. Chotirmall et al.

    22 (2), 2017, p.240

    doi:10.1111/resp.12971

96. EISSN: 2049-2618

    Microbiome

    Humanized microbiota mice as a model of recurrent Clostridium difficile disease

    James Collins, Jennifer M. Auchtung, Laura Schaefer, Kathryn A. Eaton, Robert A. Britton

    3 (1), 2015.

    doi:10.1186/s40168-015-0097-2

97. EISSN: 1932-6203

    PLoS ONE

    An Environment-Sensitive Synthetic Microbial Ecosystem

    Bo Hu, Jin Du, Rui-yang Zou, Ying-jin Yuan, Mark Isalan

    5 (5), 2010, p.e10619

    doi:10.1371/journal.pone.0010619

98. ISSN: 14714914

    Trends in Molecular Medicine

    Antibiotic-Induced Changes in the Intestinal Microbiota and Disease

    Simone Becattini, Ying Taur, Eric G. Pamer

    22 (6), 2016, p.458

    doi:10.1016/j.molmed.2016.04.003

99. EISSN: 1949-5005 ISSN: 1949-4998

    Health

    Selective Association between Cephalosporin, Quinolone, Macrolide, and Penicillin Antibiotic Consumption and Childhood Obesity in Europe

    Gabor Ternak et al.

    07 (10), 2015, p.1306

    doi:10.4236/health.2015.710145

100. EISSN: 1471-2164

     BMC Genomics

     Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment

     Mihai Pop et al.

     17 (1), 2016.

     doi:10.1186/s12864-016-2777-0

101. ISSN: 10759964

     Anaerobe

     Restored fitness leads to long-term persistence of resistant Bacteroides strains in the human intestine

     Sonja Löfmark, Cecilia Jernberg, Hanna Billström, Dan I. Andersson, Charlotta Edlund

     14 (3), 2008, p.157

     doi:10.1016/j.anaerobe.2008.02.003

102. ISSN: 14622912

     Environmental Microbiology

     Antibiotic treatments and microbes in the gut

     Sandra Macfarlane

     16 (4), 2014, p.919

     doi:10.1111/1462-2920.12399

103. EISSN: 1949-0984 ISSN: 1949-0976

     Gut Microbes

     The role of the immune system in regulating the microbiota

     Benjamin P. Willing, Navkiran Gill, B. Brett Finlay

     1 (4), 2010, p.213

     doi:10.4161/gmic.1.4.12520

104. EISSN: 1574-6968

     FEMS Microbiology Letters

     Potential use of probiotic and commensal bacteria as non-antibiotic strategies against vancomycin-resistant enterococci

     Laureen Crouzet, Lionel Rigottier-Gois, Pascale Serror

     362 (8), 2015.

     doi:10.1093/femsle/fnv012

105. EISSN: 1758-1052 ISSN: 0956-4624

     International Journal of STD & AIDS

     What is the appropriate therapy for asymptomatic gonorrhoea in men who have sex with men?

     Chris R Kenyon, Kara Osbak, Marc Vandenbruane

     27 (9), 2016, p.812

     doi:10.1177/0956462416642933

106. ISSN: 0951-7375

     Current Opinion in Infectious Diseases

     The human gut microbiome of Latin America populations

     Fabien Magne, Miguel L. O’Ryan, Roberto Vidal, Mauricio Farfan

     29 (5), 2016, p.528

     doi:10.1097/QCO.0000000000000300

107. EISSN: 1660-2412 ISSN: 1464-1801

     Journal of Molecular Microbiology and Biotechnology

     In vitro Analysis of the Impact of Enrofloxacin Residues on the Human Intestinal Microbiota Using 1H-NMR Spectroscopy

     Youngbeom Ahn et al.

     22 (5), 2012, p.317

     doi:10.1159/000345147

108. EISSN: 2314-7156 ISSN: 2314-8861

     Journal of Immunology Research

     Role of Microbiota and Innate Immunity in RecurrentClostridium difficileInfection

     Stefano Bibbò et al.

     p.1

     doi:10.1155/2014/462740

109. ISSN: 02692813

     Alimentary Pharmacology & Therapeutics

     Consensus report: faecal microbiota transfer - clinical applications and procedures

     J. König et al.

     45 (2), 2017, p.222

     doi:10.1111/apt.13868

110. ISSN: 01652478

     Immunology Letters

     Multi-omics analysis of inflammatory bowel disease

     Hu Huang, Pajau Vangay, Christopher E. McKinlay, Dan Knights

     162 (2), 2014, p.62

     doi:10.1016/j.imlet.2014.07.014

111. EISSN: 1949-0984 ISSN: 1949-0976

     Gut Microbes

     Consumption of different soymilk formulations differentially affects the gut microbiomes of overweight and obese men

     Dina Fernandez-Raudales et al.

     3 (6), 2012, p.490

     doi:10.4161/gmic.21578

112. EISSN: 1572-0241 ISSN: 0002-9270

     The American Journal of Gastroenterology

     Editorial: Bugs and Drugs: Insights into the Pathogenesis of Inflammatory Bowel Disease

     Geoffrey C Nguyen

     106 (12), 2011, p.2143

     doi:10.1038/ajg.2011.308

113. ISSN: 08159319

     Journal of Gastroenterology and Hepatology

     Gut dysbiosis in acute-on-chronic liver failure and its predictive value for mortality

     Yanfei Chen et al.

     30 (9), 2015, p.1429

     doi:10.1111/jgh.12932

114. EISSN: 1740-1534 ISSN: 1740-1526

     Nature Reviews Microbiology

     'Blooming' in the gut: how dysbiosis might contribute to pathogen evolution

     Bärbel Stecher, Lisa Maier, Wolf-Dietrich Hardt

     11 (4), 2013, p.277

     doi:10.1038/nrmicro2989

115. ISSN: 00223476

     The Journal of Pediatrics

     Association between Early Childhood Otitis Media and Pediatric Inflammatory Bowel Disease: An Exploratory Population-Based Analysis

     Souradet Y. Shaw, James F. Blanchard, Charles N. Bernstein

     162 (3), 2013, p.510

     doi:10.1016/j.jpeds.2012.08.037

116. EISSN: 1468-3288 ISSN: 0017-5749

     Gut

     Antibiotics as deep modulators of gut microbiota: between good and evil

     Gianluca Ianiro, Herbert Tilg, Antonio Gasbarrini

     65 (11), 2016, p.1906

     doi:10.1136/gutjnl-2016-312297

117. EISSN: 1553-7358

     PLoS Computational Biology

     Ecological Modeling from Time-Series Inference: Insight into Dynamics and Stability of Intestinal Microbiota

     Richard R. Stein et al.

     9 (12), 2013, p.e1003388

     doi:10.1371/journal.pcbi.1003388

118. EISSN: 2079-6382

     Antibiotics

     Colonization Resistance of the Gut Microbiota against Clostridium difficile

     Ana Pérez-Cobas, Andrés Moya, María Gosalbes, Amparo Latorre

     4 (3), 2015, p.337

     doi:10.3390/antibiotics4030337

119. EISSN: 1932-6203

     PLoS ONE

     Comparative Analysis of Korean Human Gut Microbiota by Barcoded Pyrosequencing

     Young-Do Nam et al.

     6 (7), 2011, p.e22109

     doi:10.1371/journal.pone.0022109

120. ISSN: 02659247

     BioEssays

     Metagenomic insights into the human gut resistome and the forces that shape it

     Kristoffer Forslund, Shinichi Sunagawa, Luis P. Coelho, Peer Bork

     36 (3), 2014, p.316

     doi:10.1002/bies.201300143

121. ISSN: 00468177

     Human Pathology

     Use of 18S ribosomal DNA polymerase chain reaction–denaturing gradient gel electrophoresis to study composition of fungal community in 2 patients with intestinal transplants

     Qiurong Li et al.

     43 (8), 2012, p.1273

     doi:10.1016/j.humpath.2011.09.017

122. EISSN: 1949-0984 ISSN: 1949-0976

     Gut Microbes

     Elucidating the role of the host genome in shaping microbiome composition

     Emily R. Davenport

     7 (2), 2016, p.178

     doi:10.1080/19490976.2016.1155022

123. ISSN: 00192805

     Immunology

     Intestinal colonization resistance

     Trevor D. Lawley, Alan W. Walker

     138 (1), 2013, p.1

     doi:10.1111/j.1365-2567.2012.03616.x

124. EISSN: 1949-0984 ISSN: 1949-0976

     Gut Microbes

     Antibiotic perturbation of the preterm infant gut microbiome and resistome

     Andrew J. Gasparrini et al.

     7 (5), 2016, p.443

     doi:10.1080/19490976.2016.1218584

125. EISSN: 1949-0984 ISSN: 1949-0976

     Gut Microbes

     Composition of the early intestinal microbiota

     Fiona Fouhy, R. Paul Ross, Gerald F. Fitzgerald, Catherine Stanton, Paul D. Cotter

     3 (3), 2012, p.203

     doi:10.4161/gmic.20169

126. ISSN: 24094943

     The Ukrainian Biochemical Journal

     Carbohydrate composition of rat intestine surface mucus layer after ceftriaxone treatment

     Yu. V. Holota, Ya. A. Olefir, T. V. Dovbynchuk, G. M. Tolstanova

     88 (6), 2016, p.35

     doi:10.15407/ubj88.06.035

127. EISSN: 1557-8100 ISSN: 1536-2310

     OMICS: A Journal of Integrative Biology

     Pharmacomicrobiomics: The Impact of Human Microbiome Variations on Systems Pharmacology and Personalized Therapeutics

     Marwa ElRakaiby et al.

     18 (7), 2014, p.402

     doi:10.1089/omi.2014.0018

128. EISSN: 1435-4373 ISSN: 0934-9723

     European Journal of Clinical Microbiology & Infectious Diseases

     History of antimicrobial use and the risk of Dientamoeba fragilis infection

     D. Röser, J. Simonsen, H. V. Nielsen, C. R. Stensvold, K. Mølbak

     34 (6), 2015, p.1145

     doi:10.1007/s10096-015-2334-9

129. ISSN: 03781135

     Veterinary Microbiology

     Selection of CMY-2 producing Escherichia coli in the faecal flora of dogs treated with cephalexin

     Peter Damborg, Ingrid B. Gaustad, John E. Olsen, Luca Guardabassi

     151 (3-4), 2011, p.404

     doi:10.1016/j.vetmic.2011.03.015

130. EISSN: 2093-0429 ISSN: 1598-2467

     Journal of Bacteriology and Virology

     The Effect of Probiotics, Antibiotics, and Antipyretic Analgesics on Gut Microbiota Modification

     Yeojun Yun et al.

     47 (1), 2017, p.64

     doi:10.4167/jbv.2017.47.1.64

131. EISSN: 1476-4687 ISSN: 0028-0836

     Nature

     Genomic variation landscape of the human gut microbiome

     Siegfried Schloissnig et al.

     493 (7430), 2012, p.45

     doi:10.1038/nature11711

132. EISSN: 1941-2452 ISSN: 0884-5336

     Nutrition in Clinical Practice

     Gut Microbiome

     Gail A. Cresci, Emmy Bawden

     30 (6), 2015, p.734

     doi:10.1177/0884533615609899

133. EISSN: 1932-6203

     PLOS ONE

     Antepartum Antibiotic Treatment Increases Offspring Susceptibility to Experimental Colitis: A Role of the Gut Microbiota

     Peris Mumbi Munyaka et al.

     10 (11), 2015, p.e0142536

     doi:10.1371/journal.pone.0142536

134. ISSN: 07349750

     Biotechnology Advances

     Gut microbiota, host health, and polysaccharides

     Xiaofei Xu, Pingping Xu, Chungwah Ma, Jian Tang, Xuewu Zhang

     31 (2), 2013, p.318

     doi:10.1016/j.biotechadv.2012.12.009

135. EISSN: 1741-7015

     BMC Medicine

     Antibiotics, obesity and the link to microbes - what are we doing to our children?

     Olli Turta, Samuli Rautava

     14 (1), 2016.

     doi:10.1186/s12916-016-0605-7

136. ISSN: 00296643

     Nutrition Reviews

     Intestinal microbiota development in the premature neonate: establishment of a lasting commensal relationship?

     Maka Mshvildadze, Josef Neu, Volker Mai

     66 (11), 2008, p.658

     doi:10.1111/j.1753-4887.2008.00119.x

137. ISSN: 01688278

     Journal of Hepatology

     Impact of oral vancomycin on gut microbiota, bile acid metabolism, and insulin sensitivity

     Anne Vrieze et al.

     60 (4), 2014, p.824

     doi:10.1016/j.jhep.2013.11.034

138. EISSN: 1664-302X

     Frontiers in Microbiology

     Inferring Microbial Interactions in the Gut of the Hong Kong Whipping Frog (Polypedates megacephalus) and a Validation Using Probiotics

     Francis Cheng-Hsuan Weng, Grace Tzun-Wen Shaw, Chieh-Yin Weng, Yi-Ju Yang, Daryi Wang

     doi:10.3389/fmicb.2017.00525

139. EISSN: 1471-2180

     BMC Microbiology

     The altered gut microbiota in adults with cystic fibrosis

     D.G. Burke et al.

     17 (1), 2017.

     doi:10.1186/s12866-017-0968-8

140. EISSN: 1432-184X ISSN: 0095-3628

     Microbial Ecology

     Robustness of the Bacterial Community in the Cabbage White Butterfly Larval Midgut

     Courtney J. Robinson, Patrick Schloss, Yolied Ramos, Kenneth Raffa, Jo Handelsman

     59 (2), 2010, p.199

     doi:10.1007/s00248-009-9595-8

141. EISSN: 1932-6203

     PLoS ONE

     Long-Term Changes in Human Colonic Bifidobacterium Populations Induced by a 5-Day Oral Amoxicillin-Clavulanic Acid Treatment

     Irène Mangin et al.

     7 (11), 2012, p.e50257

     doi:10.1371/journal.pone.0050257

142. ISSN: 09639969

     Food Research International

     Antibiotic resistance among commercially available probiotics

     Poonam Sharma, Sudhir Kumar Tomar, Pawas Goswami, Vikas Sangwan, Rameshwar Singh

     p.176

     doi:10.1016/j.foodres.2014.01.025

143. EISSN: 1471-2180

     BMC Microbiology

     The gut microbiota of Colombians differs from that of Americans, Europeans and Asians

     Juan S Escobar, Bernadette Klotz, Beatriz E Valdes, Gloria M Agudelo

     14 (1), 2014.

     doi:10.1186/s12866-014-0311-6

144. ISSN: 08915520

     Infectious Disease Clinics of North America

     Pathogenic Factors Involved in the Development of Irritable Bowel Syndrome: Focus on a Microbial Role

     Carolina M. Bolino, Premysl Bercik

     24 (4), 2010, p.961

     doi:10.1016/j.idc.2010.07.005

145. ISSN: 18606768

     Biotechnology Journal

     Quantifying your body: A how-to guide from a systems biology perspective

     Larry Smarr

     7 (8), 2012, p.980

     doi:10.1002/biot.201100495

146. ISSN: 19313128

     Cell Host & Microbe

     Defining a Healthy Human Gut Microbiome: Current Concepts, Future Directions, and Clinical Applications

     Fredrik Bäckhed et al.

     12 (5), 2012, p.611

     doi:10.1016/j.chom.2012.10.012

147. EISSN: 1949-0984 ISSN: 1949-0976

     Gut Microbes

     Gut microbes and adverse food reactions: Focus on gluten related disorders

     Heather J Galipeau, Elena F Verdu

     5 (5), 2014, p.594

     doi:10.4161/19490976.2014.969635

148. EISSN: 1474-1741 ISSN: 1474-1733

     Nature Reviews Immunology

     Microbiota-mediated colonization resistance against intestinal pathogens

     Charlie G. Buffie, Eric G. Pamer

     13 (11), 2013, p.790

     doi:10.1038/nri3535

149. ISSN: 10759964

     Anaerobe

     Impact of enrofloxacin on the human intestinal microbiota revealed by comparative molecular analysis

     Bong-Soo Kim, Jong Nam Kim, Seok-Hwan Yoon, Jongsik Chun, Carl E. Cerniglia

     18 (3), 2012, p.310

     doi:10.1016/j.anaerobe.2012.01.003

150. EISSN: 1573-3890 ISSN: 1573-3882

     Metabolomics

     Prolonged antibiotic use induces intestinal injury in mice that is repaired after removing antibiotic pressure: implications for empiric antibiotic therapy

     Lindsey E. Romick-Rosendale, Anne Legomarcino, Neil B. Patel, Ardythe L. Morrow, Michael A. Kennedy

     10 (1), 2014, p.8

     doi:10.1007/s11306-013-0546-5

151. EISSN: 1740-2530 ISSN: 1740-2522

     Clinical and Developmental Immunology

     Perinatal Programming of Asthma: The Role of Gut Microbiota

     Meghan B. Azad, Anita L. Kozyrskyj

     p.1

     doi:10.1155/2012/932072

152. EISSN: 1549-7801 ISSN: 0738-8551

     Critical Reviews in Biotechnology

     The human microbiota associated with overall health

     Xiaofei Xu, Zhujun Wang, Xuewu Zhang

     35 (1), 2015, p.129

     doi:10.3109/07388551.2013.819485

153. EISSN: 2233-6869 ISSN: 1598-9992

     The Korean Journal of Gastroenterology

     The Intestinal Microbiota and Human Disease

     Jae Sung Ko

     62 (2), 2013, p.85

     doi:10.4166/kjg.2013.62.2.85

154. EISSN: 1740-1534 ISSN: 1740-1526

     Nature Reviews Microbiology

     The resilience of the intestinal microbiota influences health and disease

     Felix Sommer, Jacqueline Moltzau Anderson, Richa Bharti, Jeroen Raes, Philip Rosenstiel

     doi:10.1038/nrmicro.2017.58

155. EISSN: 1574-6968

     FEMS Microbiology Letters

     Use your antibiotics wisely. Consequences to the intestinal microbiome

     Jorge Cervantes, Arnoud van Vliet

     363 (10), 2016, p.fnw081

     doi:10.1093/femsle/fnw081

156. EISSN: 2167-8359

     PeerJ

     Antibiotic resistance potential of the healthy preterm infant gut microbiome

     Graham Rose et al.

     p.e2928

     doi:10.7717/peerj.2928

157. EISSN: 1471-2970 ISSN: 0962-8436

     Philosophical Transactions of the Royal Society B: Biological Sciences

     The human gut resistome

     W. van Schaik

     370 (1670), 2015, p.20140087

     doi:10.1098/rstb.2014.0087

158. EISSN: 1574-6976

     FEMS Microbiology Reviews

     Archaea associated with human surfaces: not to be underestimated

     Corinna Bang, Ruth A. Schmitz, Franz Narberhaus

     39 (5), 2015, p.631

     doi:10.1093/femsre/fuv010

159. ISSN: 10445323

     Seminars in Immunology

     A fresh look at the hygiene hypothesis: How intestinal microbial exposure drives immune effector responses in atopic disease

     Eric M. Brown, Marie-Claire Arrieta, B. Brett Finlay

     25 (5), 2013, p.378

     doi:10.1016/j.smim.2013.09.003

160. EISSN: 1432-184X ISSN: 0095-3628

     Microbial Ecology

     Antibiotic Resistance is Widespread in Urban Aquatic Environments of Rio de Janeiro, Brazil

     Felipe H. Coutinho et al.

     68 (3), 2014, p.441

     doi:10.1007/s00248-014-0422-5

161. EISSN: 2045-2322

     Scientific Reports

     Abrupt suspension of probiotics administration may increase host pathogen susceptibility by inducing gut dysbiosis

     Zhi Liu, Wenshu Liu, Chao Ran, Jun Hu, Zhigang Zhou

     6 (1), 2016.

     doi:10.1038/srep23214

162. EISSN: 1664-3224

     Frontiers in Immunology

     Immune Responses to Broad-Spectrum Antibiotic Treatment and Fecal Microbiota Transplantation in Mice

     Ira Ekmekciu et al.

     doi:10.3389/fimmu.2017.00397

163. ISSN: 00955108

     Clinics in Perinatology

     The Altered Gut Microbiome and Necrotizing Enterocolitis

     Roberto Murgas Torrazza, Josef Neu

     40 (1), 2013, p.93

     doi:10.1016/j.clp.2012.12.009

164. EISSN: 1545-3251 ISSN: 0066-4227

     Annual Review of Microbiology

     Effects of Antibiotics on Human Microbiota and Subsequent Disease

     Kristie M. Keeney, Sophie Yurist-Doutsch, Marie-Claire Arrieta, B. Brett Finlay

     68 (1), 2014, p.217

     doi:10.1146/annurev-micro-091313-103456

165. EISSN: 1878-7479 ISSN: 1933-7213

     Neurotherapeutics

     The Gut Microbiome as Therapeutic Target in Central Nervous System Diseases: Implications for Stroke

     Katarzyna Winek, Ulrich Dirnagl, Andreas Meisel

     13 (4), 2016, p.762

     doi:10.1007/s13311-016-0475-x

166. EISSN: 1932-6203

     PLoS ONE

     Neutral and Acidic Oligosaccharides Supplementation Does Not Increase the Vaccine Antibody Response in Preterm Infants in a Randomized Clinical Trial

     Jolice P. van den Berg et al.

     8 (8), 2013, p.e70904

     doi:10.1371/journal.pone.0070904

167. EISSN: 1543-8392 ISSN: 1543-8384

     Molecular Pharmaceutics

     Effect of Intestinal Flora on Protein Expression of Drug-Metabolizing Enzymes and Transporters in the Liver and Kidney of Germ-Free and Antibiotics-Treated Mice

     Takuya Kuno, Mio Hirayama-Kurogi, Shingo Ito, Sumio Ohtsuki

     13 (8), 2016, p.2691

     doi:10.1021/acs.molpharmaceut.6b00259

168. ISSN: 01688278

     Journal of Hepatology

     Functional analysis of the relationship between intestinal microbiota and the expression of hepatic genes and pathways during the course of liver regeneration

     Hui-Xin Liu, Clarissa Santos Rocha, Satya Dandekar, Yu-Jui Yvonne Wan

     64 (3), 2016, p.641

     doi:10.1016/j.jhep.2015.09.022

169. ISSN: 1078-0998

     Inflammatory Bowel Diseases

     Epidemiology, Diagnosis, and Management of Clostridium difficile Infection in Patients with Inflammatory Bowel Disease

     Krishna Rao, Peter D. R. Higgins

     22 (7), 2016, p.1744

     doi:10.1097/MIB.0000000000000793

170. EISSN: 1464-3685 ISSN: 0300-5771

     International Journal of Epidemiology

     Perinatal microbial exposure may influence aortic intima-media thickness in early infancy

     Kate McCloskey et al.

     46 (1), 2017, p.209

     doi:10.1093/ije/dyw042

171. ISSN: 01677012

     Journal of Microbiological Methods

     Rapid lab-on-a-chip profiling of human gut bacteria

     Joakim Bjerketorp et al.

     72 (1), 2008, p.82

     doi:10.1016/j.mimet.2007.10.011

172. ISSN: 10538569

     Pharmacoepidemiology and Drug Safety

     Impact of antibiotic exposure on the risk of colorectal cancer

     Ben Boursi, Kevin Haynes, Ronac Mamtani, Yu-Xiao Yang

     24 (5), 2015, p.534

     doi:10.1002/pds.3765

173. EISSN: 1556-8342 ISSN: 1556-8253

     Breastfeeding Medicine

     Abstracts from the 16thInternational Society for Research in Human Milk and Lactation Conference

     7 (6), 2012, p.556

     doi:10.1089/bfm.2012.9974

174. ISSN: 01686496

     FEMS Microbiology Ecology

     Diversity ofBacillus cereusgroup strains is reflected in their broad range of pathogenicity and diverse ecological lifestyles

     Siele Ceuppens, Nico Boon, Mieke Uyttendaele

     84 (3), 2013, p.433

     doi:10.1111/1574-6941.12110

175. ISSN: 10436618

     Pharmacological Research

     Therapeutic modulation of intestinal dysbiosis

     Alan W. Walker, Trevor D. Lawley

     69 (1), 2013, p.75

     doi:10.1016/j.phrs.2012.09.008

176. ISSN: 01909622

     Journal of the American Academy of Dermatology

     The skin microbiome: Current perspectives and future challenges

     Yiyin Erin Chen, Hensin Tsao

     69 (1), 2013, p.143

     doi:10.1016/j.jaad.2013.01.016

177. EISSN: 1476-8305 ISSN: 1028-415X

     Nutritional Neuroscience

     Environment, dysbiosis, immunity and sex-specific susceptibility: A translational hypothesis for regressive autism pathogenesis

     Alessandra Mezzelani et al.

     18 (4), 2015, p.145

     doi:10.1179/1476830513Y.0000000108

178. EISSN: 1469-3178 ISSN: 1469-221X

     EMBO reports

     Our microbial selves: what ecology can teach us

     Antonio Gonzalez et al.

     12 (8), 2011, p.775

     doi:10.1038/embor.2011.137

179. EISSN: 1756-2848 ISSN: 1756-283X

     Therapeutic Advances in Gastroenterology

     The intestinal microbiota dysbiosis and Clostridium difficile infection: is there a relationship with inflammatory bowel disease?

     Justyna Bien, Vindhya Palagani, Przemyslaw Bozko

     6 (1), 2013, p.53

     doi:10.1177/1756283X12454590

180. ISSN: 02697491

     Environmental Pollution

     Effects of environmental pollutants on gut microbiota

     Yuanxiang Jin, Sisheng Wu, Zhaoyang Zeng, Zhengwei Fu

     p.1

     doi:10.1016/j.envpol.2016.11.045

181. ISSN: 13501925

     Neurogastroenterology & Motility

     Microbes and the gut-brain axis

     P. Bercik, S. M. Collins, E. F. Verdu

     24 (5), 2012, p.405

     doi:10.1111/j.1365-2982.2012.01906.x

182. EISSN: 1863-2300 ISSN: 1863-2297

     Seminars in Immunopathology

     Microbial regulation of allergic responses to food

     Taylor Feehley, Andrew T. Stefka, Severine Cao, Cathryn R. Nagler

     34 (5), 2012, p.671

     doi:10.1007/s00281-012-0337-5

183. EISSN: 2045-2322

     Scientific Reports

     Modeling the Impact of Antibiotic Exposure on Human Microbiota

     Jiangchao Zhao, Susan Murray, John J. LiPuma

     4 (1), 2015.

     doi:10.1038/srep04345

184. ISSN: 19313128

     Cell Host & Microbe

     A Delicate Balance: Maintaining Mutualism to Prevent Disease

     Daria Van Tyne, Michael S. Gilmore

     16 (4), 2014, p.425

     doi:10.1016/j.chom.2014.09.019

185. EISSN: 1573-3890 ISSN: 1573-3882

     Metabolomics

     Discovery of early urinary biomarkers in preclinical study of gentamicin-induced kidney injury and recovery in rats

     Jinchun Sun et al.

     8 (6), 2012, p.1181

     doi:10.1007/s11306-012-0423-7

186. EISSN: 1865-3499 ISSN: 1555-8932

     Genes & Nutrition

     Intestinal microbiota in human health and disease: the impact of probiotics

     Jacoline Gerritsen, Hauke Smidt, Ger T. Rijkers, Willem M. de Vos

     6 (3), 2011, p.209

     doi:10.1007/s12263-011-0229-7

187. ISSN: 00145793

     FEBS Letters

     Linking microbiota and respiratory disease

     Matthias Hauptmann, Ulrich E. Schaible

     590 (21), 2016, p.3721

     doi:10.1002/1873-3468.12421

188. EISSN: 1949-0984 ISSN: 1949-0976

     Gut Microbes

     Killing of VREEnterococcus faecalisby commensal strains: Evidence for evolution and accumulation of mobile elements in the absence of competition

     Anthony O. Gaca, Michael S. Gilmore

     7 (1), 2016, p.90

     doi:10.1080/19490976.2015.1127482

189. ISSN: 01604120

     Environment International

     Concentrations of antibiotics predicted to select for resistant bacteria: Proposed limits for environmental regulation

     Johan Bengtsson-Palme, D.G. Joakim Larsson

     p.140

     doi:10.1016/j.envint.2015.10.015

190. EISSN: 1932-6203

     PLoS ONE

     Seasonal Variation in Human Gut Microbiome Composition

     Emily R. Davenport et al.

     9 (3), 2014, p.e90731

     doi:10.1371/journal.pone.0090731

191. ISSN: 20476302

     Pediatric Obesity

     The prenatal gut microbiome: are we colonized with bacteria in utero ?

     R. W. Walker, J. C. Clemente, I. Peter, R. J. F. Loos

     doi:10.1111/ijpo.12217

192. ISSN: 00220302

     Journal of Dairy Science

     Lactobacillus acidophilus modulates the virulence of Clostridium difficile

     B. Yun, S. Oh, M.W. Griffiths

     97 (8), 2014, p.4745

     doi:10.3168/jds.2014-7921

193. EISSN: 1432-0614 ISSN: 0175-7598

     Applied Microbiology and Biotechnology

     Changes in the diversity and composition of gut microbiota of weaned piglets after oral administration of Lactobacillus or an antibiotic

     Dongyan Zhang et al.

     100 (23), 2016, p.10081

     doi:10.1007/s00253-016-7845-5

194. EISSN: 1432-0975 ISSN: 0722-4028

     Coral Reefs

     Dynamics of bacterial community development in the reef coral Acropora muricata following experimental antibiotic treatment

     M. J. Sweet, A. Croquer, J. C. Bythell

     30 (4), 2011, p.1121

     doi:10.1007/s00338-011-0800-0

195. EISSN: 1747-4132 ISSN: 1747-4124

     Expert Review of Gastroenterology & Hepatology

     The gut microbiota and the liver: implications for clinical practice

     Eamonn M Quigley, Howard P Monsour

     7 (8), 2013, p.723

     doi:10.1586/17474124.2013.848167

196. EISSN: 1530-9185 ISSN: 1064-5462

     Artificial Life

     Autonomous Pattern Formation of Micro-organic Cell Density with Optical Interlink between Two Isolated Culture Dishes

     Kazunari Ozasa, Jeesoo Lee, Simon Song, Masahiko Hara, Mizuo Maeda

     21 (2), 2015, p.234

     doi:10.1162/ARTL_a_00159

197. EISSN: 1760-4788 ISSN: 1279-7707

     The journal of nutrition, health & aging

     Compositional dynamics of the human intestinal microbiota with aging: Implications for health

     B. Lakshminarayanan, C. Stanton, P. W. O’Toole, R. Paul Ross

     doi:10.1007/s12603-014-0513-5

198. EISSN: 1471-2334

     BMC Infectious Diseases

     Effectiveness of fecal-derived microbiota transfer using orally administered capsules for recurrent Clostridium difficile infection

     Bruce E Hirsch et al.

     15 (1), 2015.

     doi:10.1186/s12879-015-0930-z

199. EISSN: 1949-0984 ISSN: 1949-0976

     Gut Microbes

     Dynamic changes of the luminal and mucosa-associated gut microbiota during and after antibiotic therapy with paromomycin

     Femke-Anouska Heinsen et al.

     6 (4), 2015, p.243

     doi:10.1080/19490976.2015.1062959

200. EISSN: 14622920 ISSN: 14622912

     Environmental Microbiology

     Better living through microbial action: the benefits of the mammalian gastrointestinal microbiota on the host

     Thomas D. Leser, Lars Mølbak

     11 (9), 2009, p.2194

     doi:10.1111/j.1462-2920.2009.01941.x

201. EISSN: 1535-3907 ISSN: 1535-3893

     Journal of Proteome Research

     Antioxidant Drug Tempol Promotes Functional Metabolic Changes in the Gut Microbiota

     Jingwei Cai et al.

     15 (2), 2016, p.563

     doi:10.1021/acs.jproteome.5b00957

202. EISSN: 1476-4687 ISSN: 0028-0836

     Nature

     Diversity, stability and resilience of the human gut microbiota

     Catherine A. Lozupone, Jesse I. Stombaugh, Jeffrey I. Gordon, Janet K. Jansson, Rob Knight

     489 (7415), 2012, p.220

     doi:10.1038/nature11550

203. ISSN: 1078-0998

     Inflammatory Bowel Diseases

     Pathogenesis of Clostridium difficile Infection and Its Potential Role in Inflammatory Bowel Disease

     Tanya M. Monaghan, Alan Cockayne, Yashwant R. Mahida

     21 (8), 2015, p.1957

     doi:10.1097/MIB.0000000000000461

204. ISSN: 01686496

     FEMS Microbiology Ecology

     Differential impacts of brassicaceous and nonbrassicaceous oilseed meals on soil bacterial and fungal communities

     Emily B. Hollister, Ping Hu, Autumn S. Wang, Frank M. Hons, Terry J. Gentry

     83 (3), 2013, p.632

     doi:10.1111/1574-6941.12020

205. EISSN: 1747-4132 ISSN: 1747-4124

     Expert Review of Gastroenterology & Hepatology

     Clinical implications of antibiotic impact on gastrointestinal microbiota andClostridium difficileinfection

     Sahil Khanna, Darrell S. Pardi

     10 (10), 2016, p.1145

     doi:10.1586/17474124.2016.1158097

206. EISSN: 1468-3288 ISSN: 0017-5749

     Gut

     Management ofHelicobacter pyloriinfection—the Maastricht V/Florence Consensus Report

     P Malfertheiner et al.

     66 (1), 2017, p.6

     doi:10.1136/gutjnl-2016-312288

207. ISSN: 1078-0998

     Inflammatory Bowel Diseases

     Adherent-invasive Escherichia coli Exacerbates Antibiotic-associated Intestinal Dysbiosis and Neutrophil Extracellular Trap Activation

     Linda Vong, Chiu W. Yeung, Lee J. Pinnell, Philip M. Sherman

     22 (1), 2016, p.42

     doi:10.1097/MIB.0000000000000591

208. EISSN: 1076-836X ISSN: 1063-5157

     Systematic Biology

     Phylogenetics and the Human Microbiome

     Frederick A. Matsen

     64 (1), 2015, p.e26

     doi:10.1093/sysbio/syu053

209. EISSN: 1091-6490 ISSN: 0027-8424

     Proceedings of the National Academy of Sciences

     Human gut microbiome adopts an alternative state following small bowel transplantation

     A. L. Hartman et al.

     106 (40), 2009, p.17187

     doi:10.1073/pnas.0904847106

210. EISSN: 1533-4406 ISSN: 0028-4793

     New England Journal of Medicine

     Clostridium difficile Infection

     Dan L. Longo, Daniel A. Leffler, J. Thomas Lamont

     372 (16), 2015, p.1539

     doi:10.1056/NEJMra1403772

211. ISSN: 14714906

     Trends in Immunology

     Microbial Dysbiosis in Common Variable Immune Deficiencies: Evidence, Causes, and Consequences

     Roos-Marijn Berbers, Stefan Nierkens, Jacob M. van Laar, Debby Bogaert, Helen L. Leavis

     38 (3), 2017, p.206

     doi:10.1016/j.it.2016.11.008

212. ISSN: 00222836

     Journal of Molecular Biology

     The Yin and Yang of Bacterial Resilience in the Human Gut Microbiota

     Molly K. Gibson, Mitchell W. Pesesky, Gautam Dantas

     426 (23), 2014, p.3866

     doi:10.1016/j.jmb.2014.05.029

213. EISSN: 1756-994X

     Genome Medicine

     The effects of antibiotics on the microbiome throughout development and alternative approaches for therapeutic modulation

     Amy Langdon, Nathan Crook, Gautam Dantas

     8 (1), 2016.

     doi:10.1186/s13073-016-0294-z

214. EISSN: 1932-6203

     PLoS ONE

     Intestinal Microbiota in Healthy Adults: Temporal Analysis Reveals Individual and Common Core and Relation to Intestinal Symptoms

     Jonna Jalanka-Tuovinen et al.

     6 (7), 2011, p.e23035

     doi:10.1371/journal.pone.0023035

215. EISSN: 1687-7098 ISSN: 1687-708X

     Interdisciplinary Perspectives on Infectious Diseases

     Emerging Insights into Antibiotic-Associated Diarrhea andClostridium difficileInfection through the Lens of Microbial Ecology

     Seth T. Walk, Vincent B. Young

     p.1

     doi:10.1155/2008/125081

216. ISSN: 02725231

     Clinics in Chest Medicine

     Asthma

     Gaetano Caramori et al.

     33 (3), 2012, p.473

     doi:10.1016/j.ccm.2012.06.009

217. EISSN: 1932-6203

     PLoS ONE

     Characterization of the Gut-Associated Microbiome in Inflammatory Pouch Complications Following Ileal Pouch-Anal Anastomosis

     Andrea D. Tyler et al.

     8 (9), 2013, p.e66934

     doi:10.1371/journal.pone.0066934

218. EISSN: 1465-2080 ISSN: 1350-0872

     Microbiology

     Long-term impacts of antibiotic exposure on the human intestinal microbiota

     C. Jernberg, S. Lofmark, C. Edlund, J. K. Jansson

     156 (11), 2010, p.3216

     doi:10.1099/mic.0.040618-0

219. EISSN: 1751-7370 ISSN: 1751-7362

     The ISME Journal

     Shotgun metaproteomics of the human distal gut microbiota

     Nathan C Verberkmoes et al.

     3 (2), 2009, p.179

     doi:10.1038/ismej.2008.108

220. EISSN: 1932-6203

     PLoS ONE

     Intestinal Microbial Ecology and Environmental Factors Affecting Necrotizing Enterocolitis

     Roberto Murgas Torrazza et al.

     8 (12), 2013, p.e83304

     doi:10.1371/journal.pone.0083304

221. ISSN: 19313128

     Cell Host & Microbe

     Role of the Commensal Microbiota in Normal and Pathogenic Host Immune Responses

     Dan R. Littman, Eric G. Pamer

     10 (4), 2011, p.311

     doi:10.1016/j.chom.2011.10.004

222. ISSN: 00916749

     Journal of Allergy and Clinical Immunology

     Gut microbiota, probiotics, and vitamin D: Interrelated exposures influencing allergy, asthma, and obesity?

     Ngoc P. Ly, Augusto Litonjua, Diane R. Gold, Juan C. Celedón

     127 (5), 2011, p.1087

     doi:10.1016/j.jaci.2011.02.015

223. EISSN: 1760-4788 ISSN: 1279-7707

     The journal of nutrition, health & aging

     Compositional dynamics of the human intestinal microbiota with aging: Implications for health

     B. Lakshminarayanan, C. Stanton, P. W. O’Toole, R. Paul Ross

     18 (9), 2014, p.773

     doi:10.1007/s12603-014-0549-6

224. EISSN: 1932-6203

     PLOS ONE

     Triclosan Exposure Is Associated with Rapid Restructuring of the Microbiome in Adult Zebrafish

     Christopher A. Gaulke et al.

     11 (5), 2016, p.e0154632

     doi:10.1371/journal.pone.0154632

225. ISSN: 15216616

     Clinical Immunology

     The microbiota and autoimmunity: Their role in thyroid autoimmune diseases

     Hedda L. Köhling, Sue F. Plummer, Julian R. Marchesi, Kelly S. Davidge, Marian Ludgate

     doi:10.1016/j.clim.2017.07.001

226. ISSN: 03998320

     Gastroentérologie Clinique et Biologique

     The Microbiota and infectious diarrhea

     C.-M. Surawicz

     p.S29

     doi:10.1016/S0399-8320(10)70018-X

227. EISSN: 1932-6203

     PLoS ONE

     Effects of β-Lactam Antibiotics and Fluoroquinolones on Human Gut Microbiota in Relation to Clostridium difficile Associated Diarrhea

     Henrik Knecht et al.

     9 (2), 2014, p.e89417

     doi:10.1371/journal.pone.0089417

228. EISSN: 1476-4687 ISSN: 0028-0836

     Nature

     Microbiome: That healthy gut feeling

     James Mitchell Crow

     480 (7378), 2011, p.S88

     doi:10.1038/480S88a

229. ISSN: 14622912

     Environmental Microbiology

     Long-term monitoring of the human intestinal microbiota composition

     Mirjana Rajilić-Stojanović, Hans G. H. J. Heilig, Sebastian Tims, Erwin G. Zoetendal, Willem M. de Vos

     15 (4), 2013, p.1146

     doi:10.1111/1462-2920.12023

230. EISSN: 2167-4841

     Current Pediatrics Reports

     The Microbiome and its Impact on Disease in the Preterm Patient

     Josef Neu

     1 (4), 2013, p.215

     doi:10.1007/s40124-013-0031-7

231. ISSN: 14622912

     Environmental Microbiology

     Growth promotion and gut microbiota: insights from antibiotic use

     Harald Brüssow

     17 (7), 2015, p.2216

     doi:10.1111/1462-2920.12786

232. EISSN: 1091-6490 ISSN: 0027-8424

     Proceedings of the National Academy of Sciences

     Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites

     W. R. Wikoff et al.

     106 (10), 2009, p.3698

     doi:10.1073/pnas.0812874106

233. EISSN: 1540-9538 ISSN: 0022-1007

     The Journal of Experimental Medicine

     Familial transmission rather than defective innate immunity shapes the distinct intestinal microbiota of TLR-deficient mice

     Carles Ubeda et al.

     209 (8), 2012, p.1445

     doi:10.1084/jem.20120504

234. EISSN: 1756-994X

     Genome Medicine

     The gut microbiome in cardio-metabolic health

     Tue H Hansen, Rikke J Gøbel, Torben Hansen, Oluf Pedersen

     7 (1), 2015.

     doi:10.1186/s13073-015-0157-z

235. EISSN: 1546-0096

     Pediatric Rheumatology

     Gut microbiota-host interactions and juvenile idiopathic arthritis

     Miika Arvonen et al.

     14 (1), 2016.

     doi:10.1186/s12969-016-0104-6

236. EISSN: 2045-2322

     Scientific Reports

     Modulation of Post-Antibiotic Bacterial Community Reassembly and Host Response by Candida albicans

     John R. Erb Downward, Nicole R. Falkowski, Katie L. Mason, Ryan Muraglia, Gary B. Huffnagle

     3 (1), 2013.

     doi:10.1038/srep02191

237. ISSN: 19313128

     Cell Host & Microbe

     Collateral Damage: Microbiota-Derived Metabolites and Immune Function in the Antibiotic Era

     Christopher A. Lopez, Dawn D. Kingsbury, Eric M. Velazquez, Andreas J. Bäumler

     16 (2), 2014, p.156

     doi:10.1016/j.chom.2014.07.009

238. ISSN: 14628902

     Diabetes, Obesity and Metabolism

     Effect of antibiotics on gut microbiota, glucose metabolism and body weight regulation: a review of the literature

     K. H. Mikkelsen, K. H. Allin, F. K. Knop

     18 (5), 2016, p.444

     doi:10.1111/dom.12637