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High-throughput sequencing data analysis bioinformatics software tools

High-throughput sequencing

WGS analysis, WES analysis, De novo sequencing analysis, RNA-seq analysis, ChIP-seq analysis, BS-seq analysis, Metagenomic sequencing analysis

Microarray data analysis bioinformatics software tools

Microarray

aCGH and SNP array analysis, Gene expression array analysis, DNA methylation array analysis

Mass spectrometry software tools

Mass spectrometry

MS-based untargeted proteomics, MS-based targeted proteomics, MS-based untargeted metabolomics

NMR spectroscopy software tools

NMR spectroscopy

NMR-based proteomics, NMR-based metabolomics

Polymerase chain reaction software tools

PCR

qPCR, dPCR, Single-cell qPCR

Flow cytometry and mass cytometry software tools

Flow cytometry & mass cytometry

Flow cytometry, Mass cytometry

Bioimaging software tools

Bioimaging

Small-angle scattering, Super-resolution imaging, Mass spectrometry imaging

Other omic technology software tools

Other omic technologies

Sanger sequencing, DNA fingerprinting, nCounter System

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Genome analysis software tools and databases

Genomics

Genome annotation, Phylogenomics, Comparative genomics, Population genomics, Genome variant analysis, Genome editing, DNA structure analysis

Epigenomic analysis software tools and databases

Epigenomics

Epigenomic analysis software tools and databases

Transcriptome analysis software tools and databases

Transcriptomics

Gene expression analysis, RNA modification analysis, RNA interference, Non-coding RNA analysis, RNA structure analysis

Proteomic analysis software tools and databases

Proteomics

Protein sequence analysis, Protein comparison analysis, Protein structure analysis, PTM analysis

Metabolomic analysis software tools and databases

Metabolomics

Metabolomic analysis software tools and databases

Fluxomic analysis software tools and databases

Fluxomics

Fluxomic analysis software tools and databases

Biological pathway analysis software tools and databases

Pathway analysis

Biological pathway analysis software tools and databases

Genotype-phenotype interaction analysis software tools and databases

Genotype-phenotype analysis

GWAS analysis, Linkage analysis, QTL mapping, eQTL mapping, Phenomics

Browse by Omic Topics

Drug discovery

Synthetic biology

Metabolic engineering

Health/Medical research data

Immunology

Text mining

Bioinformatics infrastructure

Biomolecular structure

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OMICtools community

Top contributors

Alvaro Sebastian
Adam Mickiewicz University
Ka-Chun Wong
University of Toronto, Toronto,…
Shailesh Kumar
National institute of Plant Gneome…

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Top curators

Mikhail Shugay
Rep-seq analysis
Biswapriya Biswavas Misra
Data preprocessing
Victor Sabarly
MS-based untargeted metabolomics

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User reviews

CAVER by mamapcr

good

PANDA by samira elbai

hi I'm using cellsignalling technology phospho-pathscan , the array contain phospho proteins in duplicates. how…

RPISeq by shradha suyal

I had used this server http://pridb.gdcb.iastate.edu/RPISeq/ for my study. but it is no longer available.

Recent discussions

How can i graphic the annotations for cathegories of gen…

By maria Rodriguez about GeSeq

SHELL error while trying to execute

By Akshay Avvaru about GMATA

Compound name

By Deepa Maheshvare about MetaCyc

starBase v2.0

By Kamya Singh about starBase

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