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Bioconductor
@
Bioconductor
Roswell Park Cancer Institute
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1,603
ಟ್ವೀಟ್ಗಳು
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3
ಹಿಂಬಾಲಿಸುತ್ತಿರುವವರು
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4,513
ಹಿಂಬಾಲಕರು
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Bioconductor
@Bioconductor
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ಡಿಸೆಂ 12 |
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Bioconductor pkgs are just R pkgs; they don't have any special properties. The issue comes from GOSemSim::load_OrgDb, which says `require(...)`, attaching the org.db & other pkgs to the search path; this is definitely poor form, but does not cause an R CMD check warning. twitter.com/David_McGaughe…
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Bioconductor
@Bioconductor
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ಡಿಸೆಂ 12 |
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Use them fully resolved `AnnotationDbi::select()` / `dplyr::select()` or use the conflicted package cran.r-project.org/package=confli… to die earlier. twitter.com/David_McGaughe…
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| Bioconductor ಮರುಟ್ವೀಟಿಸಿದ್ದಾರೆ | ||
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Dana-Farber Biostatistics & Computational Biology
@dfcidatascience
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ಡಿಸೆಂ 7 |
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We're hiring! Want to help develop the #opensource @Bioconductor platform? Check out our Research Scientist position with @rafalab. #rstats #EuroBioc2018 #Bioc2019 bit.ly/2NCdPBB
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| Bioconductor ಮರುಟ್ವೀಟಿಸಿದ್ದಾರೆ | ||
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Levi Waldron
@LeviWaldron1
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ಡಿಸೆಂ 6 |
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Registration for #Bioc2019 in NYC is now open, and several invited speakers announced (@jtleek, @lievenClement, @siminaboca, @anshulkundaje, Lihua Julie Zhu). Travel scholarships available. FYI to all at #EuroBioc2018... bioc2019.bioconductor.org/registration
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Bioconductor
@Bioconductor
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ನವೆಂ 30 |
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really good & compassionate advice twitter.com/PeteHaitch/sta…
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| Bioconductor ಮರುಟ್ವೀಟಿಸಿದ್ದಾರೆ | ||
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EMBL Events
@EMBLEvents
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ನವೆಂ 26 |
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Registration now open for the EMBL Course: Introduction to Bioinformatics with R and Bioconductor, a beginner level course that provides a basic training in generic statistical bioinformatics data analysis, 1 - 4 Apr #EMBLRBioconductor #bioinformatics embl.de/training/event… pic.twitter.com/JuytV8Z5Ws
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| Bioconductor ಮರುಟ್ವೀಟಿಸಿದ್ದಾರೆ | ||
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Michael Lawrence
@lawremi
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ನವೆಂ 20 |
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My group @genentech is hiring a #bioinformatics software engineer talented in #rstats and familiar with @Bioconductor. We're committed to #OpenSource and science. gene.com/careers/detail…
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Bioconductor
@Bioconductor
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ನವೆಂ 15 |
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Surprised to see Python pip installation instructions pip.pypa.io/en/stable/inst… . Also as Collin notes the opportunities with GitHub, e.g., rlib/. I (MTM) read the request for support of old R as a convenience for package managers, but will reconsider from this perspective.
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Bioconductor
@Bioconductor
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ನವೆಂ 9 |
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That's not right either; BiocManager::install() knows how to install CRAN and Bio packages, so finds WGCNA (on CRAN) and its Bioconductor dependencies. Adding Bioc to the setRepositories() selection allows install.packages() to find packages that are on CRAN (WGCNA) and on Bioc.
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Bioconductor
@Bioconductor
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ನವೆಂ 9 |
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That doesn't sound correct, you've probably just not selected the Bioconductor repositories (setRepositories()) or alternatively used the (CRAN) package BiocManager to install everything BiocManager::install("WGCNA").
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| Bioconductor ಮರುಟ್ವೀಟಿಸಿದ್ದಾರೆ | ||
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Sean Davis
@seandavis12
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ನವೆಂ 9 |
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Some recent development branch updates to the #GenomicDataCommons #Bioconductor package allow both piping (%>%) and formula-free (no ~) filtering exposing the #NCI #genomic metadata like #TCGA to #dplyr-like filtering (and select).
bit.ly/2D9YO8q
@NCIGDC_Updates pic.twitter.com/RUxHz0CHAw
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| Bioconductor ಮರುಟ್ವೀಟಿಸಿದ್ದಾರೆ | ||
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Sean Davis
@seandavis12
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ನವೆಂ 8 |
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The #biodata18 software list is up at bit.ly/2RJmGnh
A tweet with hashtag #biodata18 and the CRAN, GitHub, BitBucket, or Bioconductor URL will get your software added.
Thanks to @strnr for helping set this up last year for the #gi2017 meeting. pic.twitter.com/3gnT8CoYdx
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Bioconductor
@Bioconductor
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ನವೆಂ 6 |
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#rstats / @Bioconductor Software ecosystem architect position, Dana Farber Cancer Institute support.bioconductor.org/p/114867/
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Bioconductor
@Bioconductor
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ಅಕ್ಟೋ 31 |
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Trick or Treat?!
Bioc 3.8 is now available!
bioconductor.org/news/bioc_3_8_…
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| Bioconductor ಮರುಟ್ವೀಟಿಸಿದ್ದಾರೆ | ||
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Laurent Gⓐtt⓪
@lgatt0
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ಅಕ್ಟೋ 23 |
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I'm looking for a
Research software engineer/bioinformatician to work on #rstats @Bioconductor
and omics.
academicpositions.com/ad/universite-…
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| Bioconductor ಮರುಟ್ವೀಟಿಸಿದ್ದಾರೆ | ||
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Sean Davis
@seandavis12
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ಅಕ್ಟೋ 17 |
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Our approach to producing #Bioconductor Workshop compendium for #bioc2018, coordinating 17 authors, 15 contributions to produce 388 page book and matching computational resources in 10 weeks.
bit.ly/2yK6Ot1
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| Bioconductor ಮರುಟ್ವೀಟಿಸಿದ್ದಾರೆ | ||
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Pascal Martin
@PgpMartin
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ಅಕ್ಟೋ 15 |
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Just finished to prepare 2 courses:
1) @Bioconductor core packages for #NGS data analysis
2) #RNAseq and #ChIPseq data analysis
See github.com/pgpmartin
Will teach them in the next 2 days @Univ_Toulouse M2 bioinfo
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| Bioconductor ಮರುಟ್ವೀಟಿಸಿದ್ದಾರೆ | ||
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James Taylor 🤖 🌹
@jxtx
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ಅಕ್ಟೋ 15 |
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Our team will work to make the data and compute resources in the AnVIL available to as wide a community of researchers as possible. Drawing on our experience implementing @galaxyproject and @Bioconductor we will build a variety of entry points to the AnVIL for different users... pic.twitter.com/0pSxxQM6MB
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| Bioconductor ಮರುಟ್ವೀಟಿಸಿದ್ದಾರೆ | ||
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Olga Botvinnik
@olgabot
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ಅಕ್ಟೋ 16 |
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Awesome use of @czbiohub's Tabula Muris data - a @Bioconductor package to load the data! Thanks @CSoneson!!
bioconductor.org/packages/devel…
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| Bioconductor ಮರುಟ್ವೀಟಿಸಿದ್ದಾರೆ | ||
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Dana-Farber Biostatistics & Computational Biology
@dfcidatascience
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ಅಕ್ಟೋ 12 |
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We're hiring! Want to help develop the #opensource @Bioconductor platform? Check out our Research Scientist position with @rafalab. #rstats #datascience #cancerresearch bit.ly/2NCdPBB
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