NCBI

Mammals

Primates

Scientific name	Common name	Build	Tools
Callithrix jacchus	white-tufted-ear marmoset	Annotation Release 102
Cercocebus atys	sooty mangabey	Annotation Release 100
Chlorocebus sabaeus	green monkey	Annotation Release 100
Colobus angolensis palliatus		Annotation Release 100
Gorilla gorilla	western gorilla	Annotation Release 100
Homo sapiens	human	Annotation Release 108
		Annotation Release 105
Macaca fascicularis	crab-eating macaque	Annotation Release 100
Macaca mulatta	rhesus macaque	Build 1.2
Macaca nemestrina	pig-tailed macaque	Annotation Release 100
Mandrillus leucophaeus	drill	Annotation Release 100
Nomascus leucogenys	northern white-cheeked gibbon	Annotation Release 101
		Build 1.1
Otolemur garnettii	small-eared galago	Annotation Release 100
Pan paniscus	pygmy chimpanzee	Annotation Release 102
Pan troglodytes	chimpanzee	Annotation Release 103
		Annotation Release 102
Papio anubis	olive baboon	Annotation Release 101
		Annotation Release 100
Pongo abelii	Sumatran orangutan	Annotation Release 102
Rhinopithecus roxellana	golden snub-nosed monkey	Annotation Release 100
Saimiri boliviensis	Bolivian squirrel monkey	Annotation Release 101
Tarsius syrichta	Philippine tarsier	Annotation Release 100

Rodents

Scientific name	Common name	Build	Tools
Cavia porcellus	domestic guinea pig	Annotation Release 101
Chinchilla lanigera	long-tailed chinchilla	Annotation Release 100
Cricetulus griseus	Chinese hamster	Annotation Release 101
Fukomys damarensis	Damara mole-rat	Annotation Release 100
Heterocephalus glaber	naked mole-rat	Annotation Release 100
Ictidomys tridecemlineatus	thirteen-lined ground squirrel	Annotation Release 100
Jaculus jaculus	lesser Egyptian jerboa	Annotation Release 100
Mesocricetus auratus	golden hamster	Annotation Release 100
Microtus ochrogaster	prairie vole	Annotation Release 100
Mus musculus	laboratory mouse	Annotation Release 106
		Build 37.2
Nannospalax galili	Upper Galilee mountains blind mole rat	Annotation Release 100
Octodon degus	degu	Annotation Release 100
Peromyscus maniculatus bairdii	prairie deer mouse	Annotation Release 100
Rattus norvegicus	rat	Annotation Release 106
		Annotation Release 104

Monotremes

Scientific name	Common name	Build	Tools
Ornithorhynchus anatinus	platypus	Annotation Release 102

Marsupials

Scientific name	Common name	Build	Tools
Monodelphis domestica	opossum	Annotation Release 102
Sarcophilus harrisii	Tasmanian devil	Annotation Release 100

Other Mammals

Scientific name	Common name	Build	Tools
Ailuropoda melanoleuca	giant panda	Annotation Release 101
Balaenoptera acutorostrata scammoni		Annotation Release 100
Bison bison bison		Annotation Release 100
Bos mutus	wild yak	Annotation Release 100
Bos taurus	cattle	Annotation Release 104
		Annotation Release 103
Bubalus bubalis	river buffalo	Annotation Release 100
Camelus bactrianus	Bactrian camel	Annotation Release 100
Camelus dromedarius	Arabian camel	Annotation Release 100
Camelus ferus	Wild Bactrian camel	Annotation Release 100
Canis lupus familiaris	dog	Annotation Release 104
Capra hircus	goat	Annotation Release 101
Ceratotherium simum simum	southern white rhinoceros	Annotation Release 100
Chrysochloris asiatica	Cape golden mole	Annotation Release 100
Condylura cristata	star-nosed mole	Annotation Release 100
Dasypus novemcinctus	nine-banded armadillo	Annotation Release 100
Echinops telfairi	small Madagascar hedgehog	Annotation Release 100
Elephantulus edwardii	Cape elephant shrew	Annotation Release 100
Eptesicus fuscus	big brown bat	Annotation Release 100
Equus caballus	horse	Annotation Release 102
Equus przewalskii	Przewalski's horse	Annotation Release 100
Erinaceus europaeus	western European hedgehog	Annotation Release 100
Felis catus	cat	Annotation Release 102
Galeopterus variegatus	Sunda flying lemur	Annotation Release 100
Leptonychotes weddellii	Weddell seal	Annotation Release 100
Lipotes vexillifer	Yangtze River dolphin	Annotation Release 100
Loxodonta africana	African savanna elephant	Annotation Release 101
Mustela putorius furo	ferret	Annotation Release 100
Myotis brandtii	Brandt's bat	Annotation Release 100
Myotis davidii		Annotation Release 100
Myotis lucifugus	little brown bat	Annotation Release 100
Ochotona princeps	American pika	Annotation Release 100
Odobenus rosmarus divergens	Pacific walrus	Annotation Release 100
Orcinus orca	killer whale	Annotation Release 100
Orycteropus afer afer		Annotation Release 100
Oryctolagus cuniculus	rabbit	Annotation Release 101
Ovis aries	sheep	Annotation Release 101
Panthera tigris altaica	Amur tiger	Annotation Release 100
Pantholops hodgsonii	chiru	Annotation Release 100
Physeter catodon	sperm whale	Annotation Release 100
Pteropus alecto	black flying fox	Annotation Release 100
Pteropus vampyrus	large flying fox	Annotation Release 100
Sorex araneus	European shrew	Annotation Release 100
Sus scrofa	pig	Annotation Release 105
Trichechus manatus latirostris	Florida manatee	Annotation Release 100
Tupaia chinensis	Chinese tree shrew	Annotation Release 100
Tursiops truncatus	bottlenose dolphin	Annotation Release 100
Ursus maritimus	polar bear	Annotation Release 100
Vicugna pacos	alpaca	Annotation Release 100

Birds

Scientific name	Common name	Build	Tools
Acanthisitta chloris	rifleman	Annotation Release 100
Anas platyrhynchos	mallard	Annotation Release 100
Antrostomus carolinensis	chuck-will's-widow	Annotation Release 100
Apaloderma vittatum	bar-tailed trogon	Annotation Release 100
Aptenodytes forsteri	emperor penguin	Annotation Release 100
Aquila chrysaetos canadensis		Annotation Release 100
Balearica regulorum gibbericeps	East African grey crowned-crane	Annotation Release 100
Buceros rhinoceros silvestris		Annotation Release 100
Calypte anna	Anna's hummingbird	Annotation Release 100
Cariama cristata	red-legged seriema	Annotation Release 100
Chaetura pelagica	chimney swift	Annotation Release 100
Charadrius vociferus	killdeer	Annotation Release 100
Chlamydotis macqueenii	Macqueen's bustard	Annotation Release 100
Colius striatus	speckled mousebird	Annotation Release 100
Columba livia	rock pigeon	Annotation Release 100
Corvus brachyrhynchos	American crow	Annotation Release 100
Corvus cornix cornix		Annotation Release 100
Cuculus canorus	common cuckoo	Annotation Release 100
Egretta garzetta	little egret	Annotation Release 100
Eurypyga helias	sunbittern	Annotation Release 100
Falco cherrug	Saker falcon	Annotation Release 100
Falco peregrinus	peregrine falcon	Annotation Release 100
Ficedula albicollis	collared flycatcher	Annotation Release 100
Fulmarus glacialis	Northern fulmar	Annotation Release 100
Gallus gallus	chicken	Annotation Release 102
		Build 2.1
Gavia stellata	red-throated loon	Annotation Release 100
Geospiza fortis	medium ground-finch	Annotation Release 100
Haliaeetus albicilla	white-tailed eagle	Annotation Release 100
Haliaeetus leucocephalus	bald eagle	Annotation Release 100
Leptosomus discolor	cuckoo roller	Annotation Release 100
Manacus vitellinus	golden-collared manakin	Annotation Release 100
Meleagris gallopavo	turkey	Annotation Release 101
		Build 1.1
Melopsittacus undulatus	budgerigar	Annotation Release 100
Merops nubicus	carmine bee-eater	Annotation Release 100
Mesitornis unicolor	brown roatelo	Annotation Release 100
Nestor notabilis	Kea	Annotation Release 100
Nipponia nippon	crested ibis	Annotation Release 100
Opisthocomus hoazin	hoatzin	Annotation Release 100
Pelecanus crispus	Dalmatian pelican	Annotation Release 100
Phaethon lepturus	white-tailed tropicbird	Annotation Release 100
Phalacrocorax carbo	great cormorant	Annotation Release 100
Picoides pubescens	downy woodpecker	Annotation Release 100
Pseudopodoces humilis	Tibetan ground-tit	Annotation Release 100
Pterocles gutturalis	yellow-throated sandgrouse	Annotation Release 100
Pygoscelis adeliae	Adelie penguin	Annotation Release 100
Serinus canaria	common canary	Annotation Release 100
Struthio camelus australis		Annotation Release 100
Taeniopygia guttata	zebra finch	Annotation Release 101
Tauraco erythrolophus	red-crested turaco	Annotation Release 100
Tinamus guttatus	white-throated tinamou	Annotation Release 100
Tyto alba	barn owl	Annotation Release 100
Zonotrichia albicollis	white-throated sparrow	Annotation Release 100

Other Vertebrates

Scientific name	Common name	Build	Tools
Alligator mississippiensis	American alligator	Annotation Release 100
Alligator sinensis	Chinese alligator	Annotation Release 100
Anolis carolinensis	green anole	Annotation Release 101
Astyanax mexicanus	Mexican tetra	Annotation Release 100
Callorhinchus milii	elephant shark	Annotation Release 100
Chelonia mydas	green sea turtle	Annotation Release 100
Chrysemys picta	painted turtle	Annotation Release 101
		Annotation Release 100
Cynoglossus semilaevis	tongue sole	Annotation Release 100
Danio rerio	zebrafish	Annotation Release 104
		Annotation Release 103
Esox lucius	northern pike	Annotation Release 101
Haplochromis burtoni	Burton's mouthbrooder	Annotation Release 100
Larimichthys crocea	large yellow croaker	Annotation Release 100
Latimeria chalumnae	coelacanth	Annotation Release 100
Lepisosteus oculatus	spotted gar	Annotation Release 100
Maylandia zebra	zebra mbuna	Annotation Release 100
Neolamprologus brichardi	lyretail cichlid	Annotation Release 100
Notothenia coriiceps	black rockcod	Annotation Release 100
Oreochromis niloticus	Nile tilapia	Annotation Release 102
Oryzias latipes	Japanese medaka	Annotation Release 101
Pelodiscus sinensis	Chinese soft-shelled turtle	Annotation Release 100
Poecilia formosa	Amazon molly	Annotation Release 100
Poecilia reticulata	guppy	Annotation Release 100
Pundamilia nyererei		Annotation Release 100
Python bivittatus	Burmese python	Annotation Release 100
Salmo salar	Atlantic salmon	Annotation Release 100
Stegastes partitus	bicolor damselfish	Annotation Release 100
Takifugu rubripes	Fugu	Annotation Release 101
Xenopus tropicalis	tropical clawed frog	Annotation Release 102
Xiphophorus maculatus	southern platyfish	Annotation Release 100

Insects

Scientific name	Common name	Build	Tools
Acromyrmex echinatior	Panamanian leafcutter ant	Annotation Release 100
Acyrthosiphon pisum	pea aphid	Annotation Release 101
		Build 1.1
Aedes aegypti	yellow fever mosquito	Aedes_aegypti_1.1
Anopheles gambiae	African malaria mosquito	Annotation Release 101
		AgamP3.3
Apis dorsata	giant honeybee	Annotation Release 100
Apis florea	little honeybee	Annotation Release 100
Apis mellifera	honey bee	Annotation Release 102
		Amel_4.0
Athalia rosae	coleseed sawfly	Annotation Release 100
Atta cephalotes		Annotation Release 100
Bactrocera dorsalis	oriental fruit fly	Annotation Release 100
Bombus impatiens	common eastern bumble bee	Annotation Release 101
Bombus terrestris	buff-tailed bumblebee	Annotation Release 101
Bombyx mori	domestic silkworm	Annotation Release 100
Camponotus floridanus	Florida carpenter ant	Annotation Release 100
Cerapachys biroi	clonal raider ant	Annotation Release 100
Ceratitis capitata	Mediterranean fruit fly	Annotation Release 101
Ceratosolen solmsi marchali		Annotation Release 100
Diaphorina citri	Asian citrus psyllid	Annotation Release 100
Drosophila melanogaster	fruit fly	Annotation Release 105
		Release 5.57
Drosophila pseudoobscura		Release 2.3
Drosophila virilis		Release 1.2
Fopius arisanus		Annotation Release 100
Harpegnathos saltator	Jerdon's jumping ant	Annotation Release 100
Linepithema humile	Argentine ant	Annotation Release 100
Megachile rotundata	alfalfa leafcutting bee	Annotation Release 101
Microplitis demolitor		Annotation Release 100
Musca domestica	house fly	Annotation Release 101
Nasonia vitripennis	jewel wasp	Annotation Release 101
		Build 2.1
Orussus abietinus		Annotation Release 100
Papilio polytes	common Mormon	Annotation Release 100
Papilio xuthus	Asian swallowtail	Annotation Release 100
Plutella xylostella	diamondback moth	Annotation Release 100
Pogonomyrmex barbatus	red harvester ant	Annotation Release 100
Solenopsis invicta	red fire ant	Annotation Release 100
Tribolium castaneum	red flour beetle	Annotation Release 102
Vollenhovia emeryi		Annotation Release 100
Zeugodacus cucurbitae	melon fly	Annotation Release 100

Nematode

Scientific name	Common name	Build	Tools
Caenorhabditis briggsae		Build 1.1
Caenorhabditis elegans	nematode	WS195
		WS190

Echinoderms

Scientific name	Common name	Build	Tools
Strongylocentrotus purpuratus	purple sea urchin	Annotation Release 101

Cnidaria

Scientific name	Common name	Build	Tools
Hydra vulgaris		Annotation Release 101
		Build 1.1

Other Invertebrates

Scientific name	Common name	Build	Tools
Amphimedon queenslandica		Annotation Release 101
Aplysia californica	California sea hare	Annotation Release 101
Biomphalaria glabrata	bloodfluke planorb	Annotation Release 100
Ciona intestinalis	vase tunicate	Annotation Release 102
		Annotation Release 101
Crassostrea gigas	Pacific oyster	Annotation Release 100
Galendromus occidentalis	western predatory mite	Annotation Release 100
Saccoglossus kowalevskii		Annotation Release 101

Flowering Plants

Monocots

Scientific name	Common name	Build	Tools
Aegilops tauschii
Aegilops umbellulata
Allium cepa	onion
Asparagus officinalis	asparagus
Avena atlantica x Avena hirtula
Avena strigosa x Avena wiestii
Brachypodium distachyon	stiff brome	Annotation Release 102
Cenchrus americanus	pearl millet
Cocos nucifera	coconut palm
Elaeis guineensis	African oil palm	Annotation Release 100
Eleusine coracana	finger millet
Eragrostis tef	tef
Festuca pratensis	meadow ryegrass
Hordeum bulbosum
Hordeum vulgare	barley
Lolium perenne	ryegrass
Musa acuminata	dwarf banana	Annotation Release 100
Oryza brachyantha	malo sina	Annotation Release 100
Oryza latifolia
Oryza sativa	rice	RAP Build 3
Phoenix dactylifera	date palm	Annotation Release 100
Secale cereale	rye
Setaria italica	foxtail millet	Annotation Release 102
Sorghum bicolor	sorghum	Sorbi1
Triticum aestivum	wheat
Triticum turgidum	durum wheat
Zea mays	maize	Annotation Release 100

Eudicots

Scientific name	Common name	Build	Tools
Acacia mangium
Antirrhinum majus	snapdragon
Antirrhinum majus x Antirrhinum molle
Apium graveolens
Arabidopsis lyrata	lyrate rockcress	Arabidopsis lyrata v1.0
Arabidopsis thaliana	thale cress	TAIR10
Arachis duranensis x Arachis stenosperma
Arachis stenosperma x Arachis cardenasii
Beta vulgaris subsp. vulgaris	Beta vulgaris	Annotation Release 100
Betula pendula	European white birch
Boechera stricta
Brassica juncea	brown mustard
Brassica napus	rapeseed	Annotation Release 100
Brassica nigra	black mustard
Brassica oleracea		Annotation Release 100
Brassica rapa	field mustard	Annotation Release 100
Camelina sativa	false flax	Annotation Release 100
Camellia sinensis	black tea
Capsicum annuum	pepper
Capsicum annuum x Capsicum chinense
Capsicum annuum x Capsicum frutescens
Carica papaya	papaya
Carya illinoinensis	pecan
Castanea dentata x Castanea mollissima
Cicer arietinum	chickpea	Annotation Release 100
Citrus maxima	red-fleshed pommelo
Citrus sinensis	sweet orange	Annotation Release 100
Coffea canephora	robusta coffee
Corylus avellana	European hazelnut
Cucumis melo	muskmelon	Annotation Release 100
Cucumis sativus	cucumber	Annotation Release 101
Cynara cardunculus var. scolymus	globe artichoke
Daucus carota	carrot
Erythranthe guttata	spotted monkey flower	Annotation Release 100
Eucalyptus globulus	blue gum
Eucalyptus grandis		Annotation Release 100
Eucalyptus grandis x Eucalyptus urophylla
Eucalyptus nitens
Eucalyptus urophylla
Fragaria vesca	wild strawberry	Annotation Release 101
Fragaria vesca x Fragaria nubicola
Glycine max	soybean	Annotation Release 102
Helianthus annuus	common sunflower
Hevea brasiliensis	siringa
Jatropha curcas		Annotation Release 100
Lablab purpureus	natoba
Lens culinaris	lentil
Limnanthes alba	white meadowfoam
Lotus japonicus	birdsfoot deervetch
Lupinus angustifolius	narrow-leaved blue lupine
Malus domestica	apple	Annotation Release 100
Manihot esculenta	cassava
Medicago sativa	alfalfa
Medicago truncatula	barrel medic	Build 1.1
Nelumbo nucifera	sacred lotus	Annotation Release 100
Nicotiana acuminata	acuminate tobacco
Nicotiana sylvestris	wood tobacco	Annotation Release 100
Nicotiana tabacum	common tobacco
Nicotiana tomentosiformis		Annotation Release 100
Phaseolus vulgaris	kidney bean
Populus euphratica	Euphrates poplar	Annotation Release 100
Populus trichocarpa	poplar	Build 2.3
Prunus armeniaca	apricot
Prunus cerasifera	cherry plum
Prunus dulcis	sweet almond
Prunus dulcis x Prunus persica
Prunus mume	Japanese apricot	Annotation Release 100
Prunus persica	peach
Prunus persica x Prunus dulcis
Pyrus communis	pear
Pyrus pyrifolia	sha li
Pyrus x bretschneideri	Chinese white pear	Annotation Release 100
Quercus robur	oak
Rosa chinensis	China rose
Rosa hybrid cultivar
Rosa lucieae	memorial rose
Rosa multiflora	Japanese rose
Rubus idaeus	red raspberry
Salix viminalis	osier
Sesamum indicum	sesame	Annotation Release 100
Silene vulgaris	bladder campion
Solanum lycopersicoides	nightshade
Solanum lycopersicum	tomato	Annotation Release 101
		Annotation Release 100
Solanum melongena	eggplant
Solanum peruvianum	Peruvian tomato
Solanum tuberosum	potato	Annotation Release 100
Tarenaya hassleriana	spider flower	Annotation Release 100
Theobroma cacao	cocoa
Trifolium pratense	rotklee
Turnera subulata x Turnera krapovickasii
Vigna angularis	adzuki bean
Vigna radiata	mungbean
Vigna umbellata	rice-bean
Vigna unguiculata	cowpea
Vitis vinifera	wine grape	Annotation Release 101
		IGGP build 2

Scientific name	Common name	Build	Tools
Amborella trichopoda		Annotation Release 100

Conifers

Cypress

Scientific name	Common name	Build	Tools
Cryptomeria japonica	Japanese cedar

Firs

Scientific name	Common name	Build	Tools
Pseudotsuga menziesii	Douglas-fir

Pines

Scientific name	Common name	Build	Tools
Pinus elliottii	slash pine
Pinus pinaster	maritime pine
Pinus sylvestris	Scots pine
Pinus taeda	loblolly pine
Pinus thunbergii	Japanese black pine

Spruce

Scientific name	Common name	Build	Tools
Picea abies	Norway spruce
Picea glauca	white spruce

Algae

Green Algae

Scientific name	Common name	Build	Tools
Chlamydomonas reinhardtii		Build 1.1
Ostreococcus 'lucimarinus'		Build 2.0

Red Algae

Scientific name	Common name	Build	Tools
Guillardia theta		Build 1.0
Hemiselmis andersenii		Build 1.1

Moss

Scientific name	Common name	Build	Tools
Physcomitrella patens		Build 1.1